Author

Ilan Theurillat

Max Delbrück Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:spatial transcriptomics· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1

Frequent Co-Authors

Nikolaus RajewskyiD· 3 shared Tancredi Massimo PentimalliiD· 3 shared Daniel León-PeriñániD· 2 shared Nikos KaraiskosiD· 2 shared Anastasiya BoltengageniD· 1 shared Anca MargineanuiD· 1 shared Andrew WoehleriD· 1 shared Angelika EggertiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersGenomics

Nikolaus RajewskyORCID

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3 papers

Recent·Most cited

circVDJ-seq for T cell clonotype detection in single-cell and spatial multi-omics

Izabela Plumbom, Benedikt Obermayer, Raphael Raspe, Anna Pascual Reguant, Ilan Theurillat, Tancredi Massimo Pentimalli, Yu-Hsin Hsieh, Marine Gil, Carola Dietrich, Michaela Seeger-Zografakis, Claudia Quedenau, Jeannine Wilde, Caroline Braeuning, Cornelius Fischer, Markus Schuelke, , Thomas Conrad

The paper introduces circVDJ-seq for efficient T cell receptor profiling from single-cell and spatial multi-omics data, revealing distinct immune microenvironments and T cell clonality patterns in various clinical contexts.

Genome Medicine · Jun 10, 2026Peer-reviewedGenomics

Spatiotemporal dynamics of tumor microenvironment remodelling

Kamil Lisek, Ilan Theurillat, Tancredi Massimo Pentimalli, Svea Beier, Daniel León-Periñán, Anna Antonatou, Serafima Dubnov, Marion Müller, Florian Hubl, Artemis Xhuri, Hanna Romanowicz, Beata Smolarz, Élodie Montaudon, Sandra Raimundo, Anca Margineanu, , Nikolaus Rajewsky

This study uses spatial transcriptomics to analyze tumor microenvironment remodeling dynamics in triple-negative breast cancer, identifying early stromal programs as potential therapeutic targets.

bioRxiv · Jul 15, 2025 · PreprintCancer Biology

High-resolution molecular atlas of a lung tumor in 3D

Tancredi Massimo Pentimalli, Simon Schallenberg, Daniel León-Periñán, Ivano Legnini, Ilan Theurillat, Gwendolin Thomas, Anastasiya Boltengagen, Sonja Fritzsche, Jose Nimo, Lukas Ruff, Gabriel Dernbach, Philipp Sebastian Jurmeister, Sarah R. Murphy, Mark Gregory, Yan Liang, , Nikolaus Rajewsky

This paper presents a 3D spatial atlas of a human lung carcinoma, revealing tumor microenvironment niches and their associated immune interactions and survival outcomes.

bioRxiv · May 10, 2023 · PreprintSystems Biology