Author

J. D. Yesselman

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Biophysics· 3 Microbiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:protein structure prediction· 3 Approach:statistical model· 3 Approach:deep learning· 2 Approach:experimental assay· 2 Assay:structural biology· 2 Assay:bulk RNA-seq· 1 Assay:cryo-EM· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

A. A. Kennedy· 1 shared A. E. Hargrove· 1 shared A. G. Monaghan· 1 shared A. M. Watkins· 1 shared A. Rangadurai· 1 shared A. W. Tai· 1 shared B. Lange· 1 shared B. S. Tolbert· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperMicrobiology

A. A. Kennedy

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Visualizing a two-state conformational ensemble in stem-loop 3 of the transcriptional regulator 7SK RNA

M. B. Camara, B. Lange, J. D. Yesselman, C. D. Eichhorn

The paper integrates NMR spectroscopy and chemical probing to visualize a two-state conformational ensemble in stem-loop 3 of 7SK RNA, showing structural dynamics and state conservation across vertebrates.

bioRxiv · Aug 9, 2023Biophysics

Amilorides inhibit SARS-CoV-2 replication in vitro by targeting RNA structures

M. Zafferani, C. Haddad, L. Luo, J. Davila-Calderon, L. Yuan-Chiu, C. Shema Mugisha, A. G. Monaghan, A. A. Kennedy, J. D. Yesselman, R. R. Gifford, A. W. Tai, S. B. Kutluay, M.-L. Li, G. Brewer, B. S. Tolbert, A. E. Hargrove

This study identifies amilorides as small molecules that inhibit SARS-CoV-2 replication by targeting conserved RNA structures in the 5-UTR region.

bioRxiv · Dec 5, 2020Microbiology

An RNA dynamic ensemble at atomic resolution

H. Shi, A. Rangadurai, H. Abou Assi, R. Roy, D. A. Case, D. Herschlag, J. D. Yesselman, H. M. Al-Hashimi

This study determines an atomic-resolution RNA ensemble for HIV-1 TAR using structure prediction and NMR refinement, revealing cooperative conformational changes.

bioRxiv · May 13, 2020 · PreprintBiophysics

Ribosolve: Rapid determination of three-dimensional RNA-only structures

K. Kappel, K. Zhang, Z. Su, W. Kladwang, S. Li, G. Pintilie, V. V. Topkar, R. Rangan, I. N. Zheludev, A. M. Watkins, J. D. Yesselman, W. Chiu, R. Das

Ribosolve rapidly determines 3D RNA-only structures using cryo-EM, chemical mapping, and Rosetta modeling, validated by multiple benchmarks and showing high accuracy.

bioRxiv · Jul 31, 2019Biophysics