Author

Jie Huang

Agricultural Information Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Cancer Biology· 1 Genetics· 1 Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:human· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Arzu Onar-Thomas· 1 shared Ashley MargoliD· 1 shared Banlanjo Abdulaziz UmaruiD· 1 shared Changjun ShaoiD· 1 shared Chao WangiD· 1 shared Charles B. StevensoniD· 1 shared Guigao LiniD· 1 shared Haoyu WangiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 9 mutual co-author links

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1 shared paperCancer Biology

Arzu Onar-Thomas

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Author profile →

4 papers

Recent·Most cited

A T2T Benchmark Reveals How Reference Choice Shapes Human Genome Interpretation

Zhuo Huang, Yanan Chu, Yabin Tian, Changjun Shao, Jian Wang, Xueqi Zhang, Jing Chen, Zheng Jia, Lili Li, Jiale Li, Guigao Lin, Kuo Zhang, Stylianos E. Antonarakis, Yu Kang, Jie Huang

This paper benchmarks how reference genome choice affects human genome interpretation by comparing T2T references and finding ancestry-matched references provide more accurate variant discovery.

bioRxiv · Sep 10, 2026 · PreprintGenomics

hTERT Expression, Regulation, and Prognostic Significance in Pediatric Medulloblastoma

Ryuma Tanaka, Banlanjo Abdulaziz Umaru, Matthew Sobo, Shiva Senthil Kumar, Kathleen McCarthy O'Toole Dorris, Volker Hovestadt, Vijay Ramaswamy, Marc Remke, Ashley Margol, Charles B. Stevenson, Shahab Asgharzadeh, Stewart Goldman, Lili Miles, Jie Huang, Katja von Hoff, , Rachid Drissi

This study examines hTERT expression and its prognostic impact in pediatric medulloblastoma, finding higher expression correlates with worse survival outcomes.

bioRxiv · May 6, 2026 · PreprintCancer Biology

Research on crop phenotype prediction using SNP context and whole-genome feature embedding

Huan Li, Yunpeng Cui, Tan Sun, Ting Wang, Zhen Chen, Chao Wang, Wenbo Bian, Juan Liu, Mo Wang, Li Chen, Jinming Wu, Jie Huang

This paper introduces SNP-context and whole-genome feature embeddings using DNABERT-2 for crop phenotype prediction, showing improved accuracy over traditional methods for traits with varying heritability.

bioRxiv · Apr 8, 2025 · PreprintGenetics

Mass mortality associated with Carpione Rhabdovirus in golden pompano (Trachinotus ovatus) in China: First report

Heng Sun, Jie Huang, Haoyu Wang, Yule Zhang, Qing Fei, Jie Zhou, Lindi Yang, Yanping Li, Jichang Jian, Yishan Lu, Shuanghu Cai, Yucong Huang

This study reports the first natural infection of Carpione Rhabdovirus in golden pompano fish in China, associated with high mortality and characterized by viral morphology and genetic analysis.

Aquaculture · Sep 21, 2024Peer-reviewedMicrobiology