Author

John A. Tipps

Vanderbilt University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Neuroscience· 2

Signature Assays, Organisms & Methods

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Organism:C. elegans· 4 Assay:bulk RNA-seq· 3 Research Focus:differential expression· 3 Approach:statistical model· 3 Assay:scRNA-seq· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1

Frequent Co-Authors

David M. MilleriD· 4 shared Abigail PoffiD· 3 shared Alec Barrett· 3 shared Alexis WeinrebiD· 3 shared Erdem VaroliD· 3 shared Marc HammarlundiD· 3 shared Rebecca M. McWhirter· 3 shared Seth R. TayloriD· 3 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersGenomics

David M. MillerORCID

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Author profile →

4 papers

Recent·Most cited

Integrating bulk and single cell RNA-seq refines transcriptomic profiles of individual C. elegans neurons

Alec Barrett, Erdem Varol, Alexis Weinreb, Seth R. Taylor, Rebecca M. McWhirter, Cyril Cros, Berta Vidal, Manasa Basaravaju, Abigail Poff, John A. Tipps, Maryam Majeed, Chen Wang, Emily A. Bayer, Molly B. Reilly, Eviatar Yemini, , Marc Hammarlund

The paper integrates bulk and single-cell RNA-seq data from C. elegans neurons to improve transcript detection and differential gene analysis.

bioRxiv · Jan 26, 2025 · PreprintGenomics

Alternative splicing across the C. elegans nervous system

Alexis Weinreb, Erdem Varol, Alec Barrett, Rebecca M. McWhirter, Seth R. Taylor, Isabel G. Courtney, Manasa Basavaraju, Abigail Poff, John A. Tipps, Becca Collings, Smita Krishnaswamy, David M. Miller, Marc Hammarlund

The paper presents an atlas of alternative splicing in C. elegans neurons, identifies novel splicing events, and describes regulatory patterns and networks.

bioRxiv · May 16, 2024 · PreprintNeuroscience

The Epithelial Na+ Channel UNC-8 promotes an endocytic mechanism that recycles presynaptic components from old to new boutons in remodeling neurons

Andrea Cuentas-Condori, Siqi Chen, Mia Krout, Kristin L. Gallik, John A. Tipps, Casey D. Gailey, Leah Flautt, Hongkyun Kim, Ben Mulcahy, Mei Zhen, Janet E. Richmond, David M. Miller

The paper shows that UNC-8, an ENaC protein, promotes Ca2+-dependent endocytosis to dismantle and recycle presynaptic components during neuronal remodeling in C. elegans.

Cell Reports · Oct 30, 2023Peer-reviewedNeuroscience

Integrating bulk and single cell RNA-seq refines transcriptomic profiles of individual C. elegans neurons

Alec Barrett, Erdem Varol, Alexis Weinreb, Seth R. Taylor, Rebecca M. McWhirter, Cyril Cros, Berta Vidal, Manasa Basavaraju, Abigail Poff, John A. Tipps, Maryam Majeed, Chen Wang, Emily A. Bayer, Molly B. Reilly, Eviatar Yemini, , Marc Hammarlund

The paper integrates bulk and single-cell RNA-seq data from C. elegans neurons to improve transcript detection and differential gene analysis.

bioRxiv · Apr 5, 2022 · PreprintGenomics