Author

N. Nakanishi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Evolutionary Biology· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Organism:bacteria (other)· 3 Research Focus:gene regulatory network inference· 2 Research Focus:host-pathogen & immune response· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

T. Iwamoto· 2 shared A. Hussain· 1 shared A. N. Tamvacakis· 1 shared A. Ota· 1 shared A. Toyoda· 1 shared C. Nakagawa· 1 shared D. Yamane· 1 shared E. Duggan· 1 shared

Activity by Year

2020-2021 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 9 mutual co-author links

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2 shared papersMicrobiology

T. Iwamoto

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Cnidarian hair cell development illuminates an ancient role for the class IV POU transcription factor in defining mechanoreceptor identity

E. Ozment, A. N. Tamvacakis, J. Zhou, P. Y. Rosiles-Loeza, E. E. Escobar-Hernandez, S. L. Fernandez-Valverde, N. Nakanishi

This study identifies POU-IV as a key regulator of hair cell development in the sea anemone Nematostella vectensis, revealing its ancient role in mechanoreceptor identity.

bioRxiv · Oct 12, 2021Evolutionary Biology

Characterization of a Novel Plasmid in Serratia marcescens Harboring blaGES-5 Isolated from a Nosocomial Outbreak in Japan

N. Nakanishi, S. Komatsu, T. Iwamoto, R. Nomoto

This study characterizes a novel plasmid harboring blaGES-5 in Serratia marcescens from a nosocomial outbreak, highlighting its role in carbapenem resistance.

bioRxiv · Jul 27, 2021Microbiology

Single-Domain SARS-CoV-2 S1 and RBD Antibodies Isolated from Immunized Llama Effectively Bind Targets of the Wuhan, UK, and South African Strains in vitro

D. Yamane, I. Lu, W. Tiahjono, L. Rubidoux, A. Hussain, J. C. Cancilla, E. Duggan, N. C. Shaner, N. Nakanishi, J. Wang

The paper validates that single-domain antibodies bind RBD of SARS-CoV-2 from original, UK, and South African variants, ensuring their effectiveness in antigen detection tests.

bioRxiv · Feb 15, 2021 · PreprintImmunology

Diversification of the restriction modification system of Streptococcus pyogenes through its acquisition of mobile elements

A. Ota, Y. Nishiuchi, N. Nakanishi, Y. Iijima, T. Iwamoto, K. Osaki, Y. Ogura, A. Toyoda, Y. Suzuki, T. Hayashi, H. Ohge, H. Mori, M. Ato, F. MARUYAMA

The paper analyzes methyltransferase diversity in Streptococcus pyogenes by comparing RM systems across genomes and suggests phage-derived MTases contribute to methylome diversity and gene regulation.

bioRxiv · Jun 30, 2020 · PreprintMicrobiology

Genetic characterization of Streptococcus pyogenes emm 89 strains isolated in Japan from 2011 to 2019

Y. Hirose, M. Yamaguchi, N. Takemoto, T. Miyoshi-Akiyama, T. Sumitomo, M. Nakata, T. Ikebe, T. Hanada, T. Yamaguchi, R. Kawahara, R. Okuno, H. Otsuka, Y. Matsumoto, Y. Terashima, Y. Kazawa, , S. Kawabata

The paper characterizes emm89 Streptococcus pyogenes strains from Japan, finding most belong to clade 3 and carry STSS-associated genes and SNPs.

bioRxiv · Apr 14, 2020Microbiology