Author

Nicolas Allègre

Centre National de la Recherche Scientifique

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Developmental Biology· 3 Cell Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 3 Organism:mouse· 3 Assay:scRNA-seq· 3 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

Claire ChazaudiD· 4 shared Irène AksoyiD· 2 shared Pierre SavatieriD· 2 shared Yoan RenaudiD· 2 shared Aurélia HuygheiD· 1 shared Charlène GuillotiD· 1 shared Cloé RognardiD· 1 shared Cynthia DennisiD· 1 shared

Activity by Year

2022-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersDevelopmental Biology

Claire ChazaudORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

A ligand/receptor trafficking clock governs self-renewal and abscission dynamics in pluripotent stem cells

Debora Libetti, Noémie Combémorel, Emma Fraimbault, Marie Lantelme, Xavier Gaume, Emile Zakiev, Yann Tapponnier, Aurélia Huyghe, Giacomo Furlan, Marion Coudurier, Léo Claret, Cloé Rognard, Serife Akguel, Serife Akguel, Hector Hernandez-vargas, , Fabrice Lavial

The paper identifies a ligand/receptor trafficking clock in pluripotent stem cells that regulates self-renewal and abscission dynamics through cyclic turnover of Netrin-1 and its receptors.

bioRxiv · Dec 23, 2025 · PreprintCell Biology

Enhanced Multiplexed Single-Cell RNA-Sequencing for Accurate Detection of Treatment Effects Without Batch Correction in the Avian Embryonic Model

Stéphanie Maupetit‐Mehouas, Felipe Maurelia, Pouria Hosseinna, Nicolas Allègre, Yoan Renaud, Jonas Cruzel, Claire Chazaud, Charlène Guillot

The paper develops a species-agnostic multiplexing method for single-cell RNA sequencing in chick embryos, enabling accurate detection of treatment effects without batch correction.

bioRxiv · Sep 30, 2025 · PreprintDevelopmental Biology

A STAT3-regulated lncRNA integrates microRNA biogenesis and sequestration to safeguard naive pluripotency

Vincent Giudice, Florence Perold, Yannicke Pijoff, Nathalie Doerflinger, Nicolas Allègre, Claire Chazaud, Irène Aksoy, Pierre Savatier, Pierre-Yves Bourillot

The paper identifies Asgard, a STAT3-regulated lncRNA, which controls microRNA biogenesis and sequestration to maintain naive pluripotency in mouse embryonic stem cells.

bioRxiv · Sep 23, 2025 · PreprintDevelopmental Biology

A Nanog-dependent gene cluster initiates the specification of the pluripotent epiblast

Nicolas Allègre, Sabine Chauveau, Cynthia Dennis, Yoan Renaud, Dimitri Meistermann, Lorena Valverde Estrella, Pierre Pouchin, Michel Cohen‐Tannoudji, Laurent David, Claire Chazaud

This study identifies a Nanog-dependent gene cluster that initiates epiblast specification in early mouse embryos, revealing a primary heterogeneity independent of NANOG, GATA6, and FGF signaling.

Nature Communications · Jun 21, 2022Peer-reviewedDevelopmental Biology