Author

T. Xue

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Evolutionary Biology· 2 Immunology· 2 Animal Behavior & Cognition· 1 Bioengineering· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 6 Research Focus:cell type annotation· 3 Assay:bulk RNA-seq· 2 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:development & morphogenesis· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Organism:mouse· 2

Frequent Co-Authors

D. Chen· 2 shared G. Lin· 2 shared J. Liu· 2 shared L. Xu· 2 shared Q. Zhang· 2 shared W. Cen· 2 shared X. Hu· 2 shared Y. Chen· 2 shared

Activity by Year

2021-2023 · peak 5/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersEvolutionary Biology

D. Chen

Mutual co-authors in cluster

Author profile →

8 papers

Recent·Most cited

A semi-automated cell tracking protocol for quantitative analyses of neutrophil swarming to sterile and S. aureus contaminated bone implants in a mouse femur model

S. Lekkala, Y. Ren, J. Weeks, K. Lee, A. J. H. Tay, B. Liu, T. Xue, J. Rainbolt, C. Xie, E. M. Schwarz, S.-C. A. Yeh

This paper develops a semi-automated cell tracking protocol to quantify neutrophil swarming in a mouse femur model with and without S. aureus infection, showing increased speed, displacement, and directionality in infected mice.

bioRxiv · Dec 7, 2023 · PreprintImmunology

Implantable nanophotonic neural probes for integrated patterned photostimulation and electrophysiology recording

F. D. Chen, H. M. Chameh, M. Movahed, H. Wahn, X. Mu, P. Ding, T. Xue, J. N. Straguzzi, D. A. Roszko, A. Sharma, A. Govdeli, Y. Jung, H. Chua, X. Lu, P. G. Q. Lo, , J. K. S. Poon

This paper introduces implantable nanophotonic neural probes that enable patterned photostimulation and electrophysiology recording with minimal thermal damage.

bioRxiv · Nov 14, 2023 · PreprintBioengineering

Tuning social interactions' strength drives collective response to light intensity in schooling fish

T. Xue, X. Li, G. Lin, R. Escobedo, Z. Han, X. Chen, C. Sire, G. Theraulaz

This study shows that varying light intensity affects social interactions and collective behavior in schooling fish by altering their responses to obstacles and group motion patterns.

bioRxiv · Apr 20, 2023Animal Behavior & Cognition

Amorphous calcium phosphate-coated surfaces as a model for bone microenvironment in prostate cancer

R. San Martin, P. Das, T. Xue, M. R. Brown, R. Dos Reis Marques, M. Essington, A. Gonzalez, R. P. McCord

The paper develops a cost-effective method to coat cell culture vessels with amorphous calcium phosphate to model the bone microenvironment and shows its effect on prostate cancer cell survival.

bioRxiv · Mar 20, 2023Cancer Biology

LINC00261 expression reduces mutation accumulation while conferring resistance to cisplatin and altering the tumor-immune microenvironment in lung adenocarcinoma

J. Castillo, T. Xue, S. Joseph, M. Norwood, D. J. Mullen, S. Berrellez, S. James, A. L. Epstein, T. McEachron, C. N. Marconett

This study identifies LINC00261 as a gene that reduces mutation accumulation, confers cisplatin resistance, and alters the tumor-immune microenvironment in lung adenocarcinoma.

bioRxiv · Mar 2, 2023 · PreprintCancer Biology

Three amphioxus reference genomes reveal gene and chromosome evolution of chordates

H. Zhen, L. Xu, C. Cai, Y. Zhou, J. Liu, Z. Zhu, W. Kang, D. Chen, S. Pei, T. Xue, W. Cen, C. Shi, X. Wu, Y. Huang, C. Xu, , Q. Zhou

This study presents three amphioxus reference genomes, revealing insights into chordate gene and chromosome evolution, including WGDs, chromatin architecture, and sex chromosome dynamics.

bioRxiv · Jan 4, 2022Evolutionary Biology

Single-dose AAV-based vaccine induces a high level of neutralizing antibodies against SARS-CoV-2 in rhesus macaques

D. Tong, M. Zhang, Y. Yang, H. Xia, H. Tong, H. Zhang, W. Zeng, M. Liu, Y. Wu, H. Ma, X. Hu, W. Liu, Y. Cai, Y. Yao, Y. Yao, , T. Xue

This study shows a single-dose AAV-based vaccine induces long-lasting neutralizing antibodies against multiple SARS-CoV-2 variants in rhesus macaques.

bioRxiv · May 19, 2021Immunology

Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots

Z. Huang, I. Furo, V. Peona, J. Liu, A. J. B. Gomes, W. Cen, H. Huang, Y. Zhang, D. Chen, T. Xue, Y. Chen, Q. Zhang, Z. Yue, A. Suh, E. H. C. de Oliveira, L. Xu

This study identifies recurrent chromosome fusions and gene losses in parrots, revealing the role of transposable elements and genetic drift in neo-sex chromosome evolution.

bioRxiv · Mar 8, 2021Evolutionary Biology