Author

Y. Kawashima

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 3 Cancer Biology· 2

Signature Assays, Organisms & Methods

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Organism:human· 5 Approach:experimental assay· 4 Assay:proteomics· 3 Research Focus:cell type annotation· 2 Research Focus:protein folding & dynamics· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1

Frequent Co-Authors

M. Ishikawa· 3 shared R. Konno· 3 shared D. Nakajima· 2 shared O. Ohara· 2 shared A. Guzman· 1 shared A. Iwase· 1 shared A. K. Rutsgi· 1 shared A. Kobayashi· 1 shared

Activity by Year

2023-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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3 shared papersBiochemistry

M. Ishikawa

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Thin-diaPASEF: diaPASEF for maximizing proteome coverage in single-shot proteomics

R. Konno, M. Ishikawa, D. Nakajima, K. Inukai, O. Ohara, Y. Kawashima

The paper develops Thin-diaPASEF, an optimized diaPASEF method for single-shot proteomics, achieving high protein identification and coverage in HEK cells and multi-sample analyses.

bioRxiv · Apr 26, 2024Biochemistry

Universal pretreatment development for low-input proteomics using Lauryl Maltose Neopentyl Glycol

R. Konno, M. Ishikawa, D. Nakajima, Y. Endo, O. Ohara, Y. Kawashima

The paper develops a low-input proteomics method called LASP to improve peptide recovery and reduce MS contamination, achieving 1,175 proteins identified per single cell.

Molecular & Cellular Proteomics · Apr 1, 2024Peer-reviewedBiochemistry

Mapping adipocyte interactome networks by HaloTag enrichment mass-spectrometry

J. Yazaki, T. Yamanashi, S. Nemoto, A. Kobayashi, Y. Han, T. Hasegawa, A. Iwase, M. Ishikawa, R. Konno, K. Imami, Y. Kawashima, J. Seita

The paper introduces HaloMS, a high-throughput method for mapping protein interactions in adipocytes, identifying new transcription factor complexes and networks.

bioRxiv · Dec 24, 2023Biochemistry

Global changes in open reading frame dominance of RNAs during cancer initiation and progression

Y. Suenaga, H. Kogashi, K. Nakatani, J. Lin, Y. Hasegawa, K. Kugou, Y. Kawashima, E. Furukawa, K. Okumura, E. Kita, Y. Wakabayashi, M. Kato, M. Kawazu, Y. Hippo

The paper measures ORF dominance in cancer and finds it increases with carcinogenesis, correlates with translation, and blurs coding/noncoding boundaries before metastasis.

bioRxiv · Jun 2, 2023 · PreprintCancer Biology

Sprouty4 is required for Mdm2 regulation of invasion, focal adhesion formation and metastasis in cells lacking p53.

R. M. de Queiroz, G. Efe, A. Guzman, N. Hashimoto, Y. Kawashima, T. Tanaka, A. K. Rutsgi, C. Prives

The paper shows that Mdm2 and MdmX regulate cell migration, invasion, and metastasis through Sprouty4 in p53-deficient cells.

bioRxiv · May 8, 2023Cancer Biology