Design of solubly expressed miniaturized SMART MHCs
William L. White, Hua Bai, Chun Kim…·David A. Baker
This paper designs soluble, miniaturized MHC proteins that enable stable expression in E. coli and retain peptide and TCR binding specificity.
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University of WashingtonORCID 0000-0001-6272-6673Unclaimed ORCID profile · follow to get notified of new preprints
8 papers
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William L. White, Hua Bai, Chun Kim…·David A. Baker
This paper designs soluble, miniaturized MHC proteins that enable stable expression in E. coli and retain peptide and TCR binding specificity.
Jung-Ho Chun, Birkley S. Lim, Suyasha Roy…·David A. Baker
This paper describes a designed IL-21 mimic, 21h10, which shows potent antitumor activity in multiple models and reduces toxicity through TNF blockade.
William L. White, Hailemikael K. Yirdaw, Ariel J. Ben‐Sasson…·Hao Yuan Kueh
This paper shows that T-cell receptor signaling uses condensate nucleation to selectively detect single foreign peptides by amplifying weak signals and setting spatial-temporal thresholds.
Nicholas A. Pease, Kathryn M. Denecke, Lihua Chen…·Hao Yuan Kueh
The paper shows that delaying Bcl11b activation via an epigenetic switch increases ILC generation and reduces T cell output in the thymus by redirecting progenitors at the T/ILC branchpoint.
Phuc Nguyen, Sylvia S Chien, Jin Dai…·Hao Yuan Kueh
This paper introduces UPSIDE, a deep learning platform that identifies dynamic cell phenotypic states from transmitted light movies by clustering latent representations and inferring transition rates.
Marcus A. Woodworth, Kenneth K.H. Ng, Aaron R. Halpern…·Joshua C. Vaughan
The paper introduces SCEPTRE, a method combining expansion microscopy with histone modification analysis to study chromatin states in single cells at high resolution.
Phuc Hong Nguyen, Nicholas A. Pease, Kenneth K.H. Ng…·Hao Yuan Kueh
The paper identifies an epigenetic timer mechanism that controls temporal scaling in developmental gene networks, enabling flexible size control through delayed activation of key regulators.
Kenneth K.H. Ng, Mary A. Yui, Arnav Mehta…·Hao Yuan Kueh
The paper shows that stochastic cis-acting events at the Bcl11b locus control T-cell lineage commitment dynamics through a delay in gene activation.