Author

Theodora C. Sideri

The Francis Crick InstituteORCID 0000-0002-5674-0804Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 3 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:differential expression· 2 Approach:statistical model· 2 Organism:yeast· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Folkert Jacobus van WerveniD· 4 shared Harshil PateliD· 2 shared Mark J. SkeheliD· 2 shared Adrien LégeriD· 1 shared Alexander Maman· 1 shared Ambrosius P. SnijdersiD· 1 shared Ana CasañaliD· 1 shared Andreas Christ Sølvsten JørgenseniD· 1 shared

Activity by Year

2021-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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4 shared papersMolecular Biology

Folkert Jacobus van WervenORCID

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4 papers

Recent·Most cited

Multi-signal regulation of the GSK-3β homolog Rim11 governs meiosis entry in yeast

Johanna Kociemba, Andreas Christ Sølvsten Jørgensen, Nika Tadić, Anthony D. Harris, Theodora C. Sideri, Wei Yee Chan, Fairouz Ibrahim, Elçin Ünal, Mark J. Skehel, Vahid Shahrezaei, Orlando Argüello‐Miranda, Folkert Jacobus van Werven

The paper shows how Rim11 integrates signals from PKA, TORC1, and Ime1 to regulate Ume6 phosphorylation and drive meiotic gene expression in yeast.

bioRxiv · Sep 21, 2023 · PreprintMolecular Biology

The yeast RNA methylation complex consists of conserved yet reconfigured components with m6A-dependent and independent roles

Imke Ensinck, Alexander Maman, Waleed S. Albihlal, Michelangelo Lassandro, Giulia Salzano, Theodora C. Sideri, Steven A. Howell, Enrica Calvani, Harshil Patel, G. Guy Bushkin, Markus Ralser, Ambrosius P. Snijders, Mark J. Skehel, Ana Casañal, Schraga Schwartz, Folkert Jacobus van Werven

The paper identifies three novel components of the yeast m6A methyltransferase complex and reveals their distinct m6A-dependent and independent roles in meiosis and mating.

eLife · Jun 1, 2023Peer-reviewedMolecular Biology

RNA modifications detection by comparative Nanopore direct RNA sequencing

Adrien Léger, Paulo Amaral, Luca Pandolfini, Charlotte Capitanchik, Federica Capraro, Valentina Miano, Valentina Migliori, Patrick Toolan-Kerr, Theodora C. Sideri, Anton James Enright, Konstantinos Tzelepis, Folkert Jacobus van Werven, Nicholas M. Luscombe, Isaia Barbieri, Jernej Ule, , Tony Kouzarides

The paper introduces Nanocompore, a method to detect RNA modifications using Nanopore direct RNA sequencing, validated on human polyA+ RNAs and non-coding RNAs.

Nature Communications · Dec 10, 2021Peer-reviewedGenomics

RSC and GRFs confer promoter directionality by limiting divergent noncoding transcription

Andrew C.K. Wu, Claudia Vivori, Harshil Patel, Theodora C. Sideri, Fabien Moretto, Folkert Jacobus van Werven

This study shows that RSC and GRFs control promoter directionality by reducing divergent noncoding transcription.

bioRxiv · Aug 16, 2021 · PreprintMolecular Biology