Author

Qiushi Jin

Northwestern UniversityORCID 0000-0002-6499-1910Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:Hi-C· 2 Research Focus:benchmarking· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

Jie XuiD· 2 shared Baozhen ZhangiD· 1 shared Cheng-Kai ShiauiD· 1 shared David J. DeGraffiD· 1 shared Fan Song· 1 shared Feng YueiD· 1 shared Galina GritsinaiD· 1 shared Hironobu YamashitaiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersGenomics

Jie XuORCID

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3 papers

Recent·Most cited

Epigenetic remodeling and 3D chromatin reorganization governed by NKX2-1 drive neuroendocrine prostate cancer

Xiaodong Lü, Viriya Keo, Irina Cheng, Wanqing Xie, Galina Gritsina, Juan Wang, Lina Lu, Cheng-Kai Shiau, Yueying He, Qiushi Jin, Peng Jin, Martin George Sanda, Victor G. Corces, Nicolas Altemose, Ruli Gao, , Jindan Yu

This study identifies NKX2-1-driven epigenetic and 3D chromatin remodeling as key to neuroendocrine prostate cancer progression and reveals CBP/p300 inhibitors as potential therapeutic targets.

Nature Genetics · Jul 21, 2025Peer-reviewedCancer Biology

Subtype-specific epigenomic landscape and 3D genome structure in bladder cancer

Tejaswi Iyyanki, Baozhen Zhang, Qixuan Wang, Ye Hou, Qiushi Jin, Jie Xu, Hongbo Yang, Tingting Liu, Xiaotao Wang, Fan Song, Yu Luan, Hironobu Yamashita, Ruby Chien, Huijue Lyu, Lijun Zhang, , Feng Yue

This study identifies subtype-specific epigenomic and 3D genome structures in bladder cancer, linking NPAS2 to luminal subtype regulation and clinical outcomes.

Genome biology · Apr 15, 2021Peer-reviewedGenomics

Genome-wide co-localization of RNA-DNA interactions and fusion RNA pairs

Zhangming Yan, Norman Huang, Weixin Wu, Weizhong Chen, Yiqun Jiang, Jingyao Chen, Xuerui Huang, Xingzhao Wen, Jie Xu, Qiushi Jin, Kang Zhang, Zhen Chen, Shu Chien, Sheng Zhong

The paper identifies a correlation between RNA-DNA interactions in normal cells and fusion RNA pairs in cancer, suggesting a mechanism for fusion transcript formation.

Proceedings of the National Academy of Sciences · Feb 4, 2019Peer-reviewedGenomics