Elizaveta Novikova

Inference on paths of yeast transcription pre-initiation complex assembly by model-based analysis of altered occupancy profiles

This study develops a quantitative framework to infer PIC assembly paths in yeast using ChIP-seq data from Mediator mutants, revealing gene-specific and pathway-dependent variations.

Genome-wide distribution of Rad26 and Rad1-Rad10 reveals their relationship with Mediator and RNA polymerase II

The paper investigates the genome-wide distribution of Rad26 and Rad1-Rad10 in yeast, showing their association with Mediator and Pol II, and their distinct regulatory roles in transcription and DNA repair.

FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing

FORK-seq maps DNA replication at single-molecule resolution in yeast, revealing previously missed initiation and termination events.

Mapping DNA replication with nanopore sequencing

The paper uses nanopore sequencing and a neural network to identify BrdU-labelled DNA tracts in yeast during replication, showing they align with early-firing origins.