Author

Mark Hepokoski

University of California San DiegoORCID 0000-0002-9267-9262Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Mark Hepokoski1 paper · University of California San Diego;

Biology Disciplines

Click to filter author papers

Bioengineering· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 1 Research Focus:development & morphogenesis· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Organism:mouse· 1 Approach:statistical model· 1

Frequent Co-Authors

Alexander CheniD· 1 shared Anna S. WardeniD· 1 shared Anne C. LyonsiD· 1 shared Arjun PateliD· 1 shared Atul MalhotraiD· 1 shared Celina T. NguyeniD· 1 shared Christopher W. BenneriD· 1 shared Emily A. HanseniD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioengineering

Alexander ChenORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

An Infusible Extracellular Matrix Biomaterial Improves Survival in a Model of Severe Systemic Inflammation

Maria L. Karkanitsa, Raymond M. Wang, Anne C. Lyons, Joshua M. Mesfin, Alexander Chen, Martin T. Spang, Filiberto Quintero, Kaitlyn Sadtler, Mark Hepokoski, Karen L. Christman

This study shows that an infusible extracellular matrix biomaterial improves survival in a mouse model of severe systemic inflammation by reducing inflammation and organ failure.

npj Regenerative Medicine · Oct 31, 2025Peer-reviewedBioengineering

Profiling Transcription Initiation in Peripheral Leukocytes Reveals Severity-Associated Cis-Regulatory Elements in Critical COVID-19

Michael T. Y. Lam, Sascha H. C. Duttke, Mazen Faris Odish, Hiep Dinh Le, Emily A. Hansen, Celina T. Nguyen, Samantha Trescott, Roy Y. Kim, Shaunak Deota, Max W. Chang, Arjun Patel, Mark Hepokoski, Mona Alotaibi, Mark L. Rolfsen, Katherine Perofsky, , Nicole G. Coufal

The paper profiles the active cistrome in peripheral leukocytes of critically ill COVID-19 patients to identify severity-associated cis-regulatory elements and their regulatory programs.

Cell Reports Medicine · Jan 25, 2023Peer-reviewedGenomics