The paper identifies periodic ER-PM junctions in dendrites that enable long-range Ca2+ signal integration through local spine activation and ryanodine receptor-dependent Ca2+ release.

Cell · Dec 20, 2024Peer-reviewedNeuroscience

OME-Zarr: a cloud-optimized bioimaging file format with international community support

Josh Moore, Daniela Basurto-Lozada, Sébastien Besson, John Bogovic, Jordão Bragantini, Eva M. Brown, Jean‐Marie Burel, Xavier Casas Moreno, Gustavo de Medeiros, Erin E. Diel, David Gault, Satrajit Ghosh, Ilan Gold, Yaroslav O. Halchenko, Matthew Hartley, , Jason R. Swedlow

This paper describes OME-Zarr, a cloud-optimized bioimaging file format developed through community collaboration to improve scalability and data access.

Histochemistry and Cell Biology · Jul 10, 2023Peer-reviewedBioinformatics

Adaptive-Resolution Multi-Orientation Analysis of Complex Filamentous Network Images

Mark Kittisopikul, Amir Vahabikashi, Takeshi Shimi, Robert D. Goldman, Khuloud Jaqaman

The paper introduces an image analysis method to segment filamentous structures and their intersections in microscopy images by resolving multiple orientations.

Bioinformatics · Jul 3, 2020Peer-reviewedBioinformatics

Community Standards for Open Cell Migration Data

Alejandra N Gonzalez-Beltran, Paola Masuzzo, Christophe Ampè, Gert‐Jan Bakker, Sébastien Besson, Robert H. Eibl, Peter Friedl, Matthias Gunzer, Mark Kittisopikul, Sylvia E. Le Dévédec, Simone Leo, Josh Moore, Yael Paran, Jaime Prilusky, Philippe Rocca‐Serra, , Lennart Martens

This paper presents standardization efforts for cell migration data to improve data sharing and analysis.

GigaScience · May 1, 2020Peer-reviewedBioinformatics