Author
Rutgers, The State University of New JerseyORCID 0000-0002-9592-3670Unclaimed ORCID profile · follow to get notified of new preprints
Mutual co-authors in cluster
6 papers
Recent·Most cited
A Jun, Xiang Zhang, Xiaofan Zhang, Jiaqi Wei, Tian-Shan Zhang, Yamin Deng, Pu Liu, Zongxiang Nie, Yi Chen, Nanqing Dong, Zhiqiang Gao, Siqi Sun, Tiannan Guo
MassNet provides a large-scale mass spectral corpus for proteomics, enabling AI-driven de novo peptide sequencing with improved performance over existing methods.
bioRxiv · Jun 20, 2025 · PreprintBioinformatics
Zhongyue Zhang, Zijie Qiu, Yingcheng Wu, Sitan Li, Dingyan Wang, Yong Liu, Zhuomin Zhou, Yusong Hu, Yuhan Chen, Duo An, Yongbo Wang, Haijun Yu, Zhenyi Zhong, Chubin Ou, Zichen Wang, , Shuangjia Zheng
OriGene identifies therapeutic targets by integrating diverse data modalities and outperforms human experts and models in accuracy and robustness.
bioRxiv · Jun 3, 2025 · PreprintBioinformatics
Siqi Sun, Shweta Yadav, Mulini Pingili, Dan Chang, Jing Wang
This study evaluates the impact of tissue- and blood-derived reference matrices on deconvolving bulk transcriptomic datasets, finding tissue-derived matrices perform better for tissue samples but not for blood.
Computational and Structural Biotechnology Journal · Jan 1, 2025Peer-reviewedBioinformatics
Leelabati Biswas, Katarzyna M. Tyc, Mansour Aboelenain, Siqi Sun, Iva Dundović, Kruno Vukušić, Jason Liu, Vanessa Guo, Min Xu, Richard T. W. Scott, Xin Tao, Iva M. Tolić, Jinchuan Xing, Karen Schindler
The study identifies genetic determinants of reproductive aging linked to egg aneuploidy by analyzing maternal exomes and shows kinesin gene variants contribute to aneuploidy and accelerated aging.
Proceedings of the National Academy of Sciences · Oct 30, 2024Peer-reviewedGenetic & Genomic Medicine
Siqi Sun, Mansour Aboelenain, Daniel Ariad, Mary E. Haywood, Charles R. Wageman, Marlena Duke, Aishee Bag, Manuel Viotti, M. Katz-Jaffe, Rajiv C. McCoy, Karen Schindler, Jinchuan Xing
The paper uses ulc-WGS data from PGT-A to identify a genetic locus associated with maternal meiotic aneuploidy risk and validates its function in mouse oocytes.
medRxiv · Jul 22, 2023 · PreprintGenetic & Genomic Medicine
Siqi Sun, Tyler Defosse, Ayla Boyd, Joel Sop, Faith Verderose, Diya Surray, Mark Aziz, Margaret Howland, Siwen Wu, Neha Changela, Janet Ko Jang, Karen Schindler, Jinchuan Xing, Kim S. McKim
The paper identifies 65 novel meiotic and fertility genes in Drosophila melanogaster through RNAi screening, showing their role in infertility and chromosomal nondisjunction.
bioRxiv · May 12, 2023 · PreprintGenetics