bioRxivCancer BiologyPreprint
A diffusion-like process enables expansion of advantaged gene mutations in human colonic epithelium
Cora Olpe, Doran Khamis, Maria Chukanova, Richard Kemp, Kate Marks, Cerys Tatton, Cecilia Lindskog, Nefeli Skoufou-Papoutsaki, Anna M Nicholson, Roxanne Brunton-Sim, Shalini Malhotra, Rogier ten HoopeniD, Rachel Stanley, Edward Morrissey, Douglas J Winton
Abstract
Colorectal cancer is thought to arise when the mutational burden of the clonal population of stem cells within a colonic crypt exceeds a certain threshold. Therefore, quantification of the fixation and subsequent expansion of somatic mutations in histologically normal epithelium is key to understanding colorectal cancer initiation. Here, using immunohistochemistry, loss of the histone demethylase KDM6A in normal human colonic epithelium is visualised. Interpretation of the age-related behaviour of KDM6A-negative clones revealed significant competitive advantage in intra-crypt dynamics. Further, subsequent clonal expansion into multi-crypt patches was quantified to reveal a significant 5-fold increase in crypt fission rate. To accomodate the local accumulation of new crypts, the role of crypt fusion was considered. However, no compensatory increase in fusion rate was found. Instead, evidence for crypt diffusion is presented and proposed as a means of accommodating clonal expansions. The threshold fission rate at which diffusion fails to accommodate new crypts, and which may promote polyp growth, is defined.
- organism: human
- assay: imaging
- research focus: cell type annotation
- research focus: clustering
- research focus: differential expression
- research focus: cell-cell communication
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- The landscape of somatic mutation in normal colorectal epithelial cells
H. Lee-Six, P. Ellis, … M. R. Stratton·bioRxiv·Sep 13, 2018
- Stochastic model for cell population dynamics quantifies homeostasis in colonic crypts and its disruption in early tumorigenesis
- Mathematical Model of Colorectal Cancer Initiation
C. Paterson, H. Clevers, I. Bozic·bioRxiv·Feb 8, 2020
- A switch from histone methyltransferase-EZH2 to demethylase KDM6A activity marks reinitiation of proliferation of drug treated colorectal cancer cells
Subhashree Chatterjee, Ritika Jaiswal, … Rajdeep Chowdhury·bioRxiv·Nov 4, 2025
- PTEN and ARID1A haploinsufficiency equip colonic epithelium for oncogenic transformation
N. Skoufou-Papoutsaki, S. Adler, … D. J. Winton·bioRxiv·Mar 27, 2024
- Colibactin-associated mutations in the human colon appear to reflect anatomy and early exposure, not oncogenesis
Laurel Hiatt, Elizabeth V. Peterson, … Aaron R. Quinlan·medRxiv·Apr 15, 2026