whole-genome sequencing

The paper presents chromosome-level genome assemblies for two Brazilian soybean cultivars with contrasting stink bug resistance and identifies divergent gene isoforms between them.

The paper characterizes genetic variation in the bovine sialic acid network across European and South African cattle breeds, identifying 15 prioritized protein-altering variants and highlighting population differences.

This study compares how genomic and epigenomic relationships contribute to genotype-by-environment interaction in grapevine clones, finding that epigenomic factors capture more GEI variance than genomic factors.

This paper introduces ACE, a method to create genomic chimeras by integrating large genomic segments from donor cells into a recipient genome, demonstrating its ability to generate stable chimeric organisms across species barriers.

WheatPanRef provides a unified linear pan-reference genome for wheat, improving read alignment and enabling integration of genomic resources across diverse accessions.

This study predicts cacao resistance to Phytophthora megakarya using genomic data, finding that host genomic relationships are more predictive than pathogen relatedness in a structured host-pathogen system.

This paper presents the first de novo genome assembly of the floating-hook moss Warnstorfia fluitans, along with its chloroplast and mitochondrial genomes, providing a resource for ecological and evolutionary studies.

The paper reports four new chromosome-level genome assemblies of wild Gossypium hirsutum from Yucatan, highlighting their genetic diversity and potential for improving cotton resistance traits.

The paper reports whole genome assemblies of 28 Phaeosphaeriaceae isolates from Canada, revealing genetic diversity and potential new species.

The paper presents the first chromosome-scale reference genome for Mytilus planulatus, revealing structural variation and population structure in mussels.

This paper presents the first high-quality genome assembly of a cave-dwelling remipede, revealing a repeat-rich genome with extensive gene family turnover and phylogenetic signals.

The paper tests if climate-associated genomic variation predicts phenotypic adaptation in European wild apple, finding genomic offsets link to bud-break timing but not other traits.

This paper reports the complete genome sequence and metabolic features of a new extremophile isolate, Vreelandella zhaodongensis BS253, from a hypersaline lake, highlighting its potential for biotechnological applications in carbon capture and sustainable processes.

This study investigates the genetic structure and dispersal patterns of Philornis downsi across Galapagos Islands using whole genome sequencing, finding asymmetric gene flow and genetic divergence linked to trade winds and shipping routes.

This paper presents a nearly complete haplotype-resolved chicken genome using trio-sequencing and long-read data, identifying gaps and structural variants in dot chromosomes.

The paper presents a chromosome-level genome assembly of Panagrellus redivivus, enabling comparative studies of parasitism evolution by providing a non-parasitic reference genome.

This paper presents a near telomere-to-telomere, haplotype-resolved genome assembly of Vellozia tubiflora, a desiccation-tolerant plant, providing genomic resources for evolutionary and comparative studies.

The paper generates high-quality genome assemblies for two manta and devil ray species and identifies structural variations linked to pelagic adaptation.

This study presents a chromosome-scale genome assembly of Edelweiss, revealing its recent allotetraploid origin and localized subgenome dominance.

The paper analyzes the genomic consequences of a severe bottleneck in Owens pupfish, finding reduced genetic diversity and a 17-fold contraction in effective population size, but low recent inbreeding due to population expansion.

The paper presents a chromosome-scale genome and methylome assembly for table beet, identifies candidate genes for geosmin production, and compares it with sugar beet.

The paper presents a gapless Landrace pig genome assembly that improves resolution of repetitive regions and reveals breed-specific telomere repeat structures.

This paper presents a chromosome-scale genome assembly for rubber dandelion, identifies key rubber pathway genes, and links chromosome reorganization to domestication traits.

This study uses PacBio HiFi sequencing to assemble complete Plasmodium falciparum genomes from natural infections, revealing full repertoires of immune-related genes.

The paper identifies a supernumerary B-Chromosome in Atlantic switchgrass, showing its evolutionary origin and impact on gene expression and genomic diversity.

The paper presents a chromosome-level, haplotype-resolved genome assembly for the European moose, achieving high completeness and gene annotation.

The paper presents a chromosome-scale genome assembly of Anisogramma anomala, revealing extreme genome compartmentalization and unique mitochondrial features.

The paper presents an improved genome assembly for Botrytis cinerea strain B05.10 with added telomeres and error corrections.