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363,000+ bioRxiv and medRxiv preprints, including those later published in peer-reviewed journals, across 26 biological disciplines.
Recent preprints
- GeneticsbioRxivPreprintDOI 10.1101/2024.02.01.578272
- GeneticsGenetic EpidemiologyPeer-reviewed
GxE PRS: Genotype-environment interaction in polygenic risk score models for quantitative and binary traits
Dovini Jayasinghe, Md. Moksedul Momin, Kerri Beckmann…·Sang Lee
This study introduces a novel GxE PRS model that improves type 1 error control and statistical power for genetic risk prediction, with applications to quantitative and binary traits.
18 citationstop 4% - GeneticsbioRxivPreprint
Tbx1 haploinsufficiency causes brain metabolic and behavioral anomalies in adult mice which are corrected by vitamin B12 treatment
Marianna Caterino, Debora Paris, Giulia Torromino…·Gabriella Lania
This study shows that Tbx1 haploinsufficiency in mice causes brain metabolic and behavioral issues, which are partially reversed by vitamin B12 treatment.
DOI 10.1101/2024.02.01.578212 - GeneticsMolecular Biology and EvolutionPeer-reviewed
Positive selection drives cis-regulatory evolution across the threespine stickleback Y chromosome
Daniel E. Shaw, Alice F. S. Naftaly, Michael A White
The paper investigates cis-regulatory evolution on the Y chromosome of threespine stickleback, finding positive selection in enhancer regions and correlation with X-biased gametolog expression.
2 citations - GeneticsGEN BiotechnologyPeer-reviewed
A fluorescent sex-sorting technique for insects with the demonstration in Drosophila melanogaster
Junru Liu, Danny Rayes, Omar S. Akbari
The paper develops a sex-sorting technique for insects using fluorescent proteins and differential splicing in Drosophila melanogaster.
20 citationstop 3% - GeneticsThe Annals of Applied StatisticsPeer-reviewed
Retrospective varying coefficient association analysis of longitudinal binary traits: application to the identification of genetic loci associated with hypertension
Gang Xu, Amei Amei, Weimiao Wu…·Zuoheng Wang
This study introduces RVMMAT, a method for detecting time-varying genetic effects on longitudinal binary traits, and applies it to identify hypertension-associated loci.
5 citations - GeneticsTheoretical and Applied GeneticsPeer-reviewed
Genetic Gains in IRRIs Rice Salinity Breeding and Elite Panel Development as a Future Breeding Resource
Apurva Khanna, Anumalla Mahender, Joie M. Ramos…·Waseem Hussain
The paper estimates genetic gains in IRRIs rice salinity breeding programs and develops an elite breeding panel to improve future breeding strategies for salinity-tolerant high-yielding rice lines.
23 citationstop 3% - GeneticsbioRxivPreprint
Investigating low frequency somatic mutations in Arabidopsis with Duplex Sequencing
Gus Waneka, Braden Pate, J. Grey Monroe, Daniel B. Sloan
The paper uses Duplex Sequencing to measure somatic mutation rates in Arabidopsis under different temperatures, finding very low mutation frequencies in wild-type plants.
- GeneticsbioRxivPreprint
Trait prediction through computational intelligence and machine learning applied to soybean (Glycine max) breeding in shaded environments
Antônio Carlos da Silva Júnior, Weverton Gomes da Costa, Amanda Gonçalves Guimarães…·Anderson Barbosa Evaristo
This paper uses machine learning to predict soybean grain yield under different shading levels, finding plant height as the most predictive trait.
DOI 10.1101/2024.01.31.578252 - GeneticsbioRxivPreprint
Revision of splicing variants in the DMD gene
Kseniya Davydenko, Alexandra Yu. Filatova, Mikhail Y. Skoblov
The paper identifies and validates splicing variants in the DMD gene, showing most intronic variants affect splicing and many exonic variants disrupt splicing, with clinical implications for Duchenne and Becker muscular dystrophy.
1 citation - GeneticseLifePeer-reviewed
SCC3 is an axial element essential for homologous chromosome pairing and synapsis
Yangzi Zhao, Lijun Ren, Tingting Zhao…·Zhukuan Cheng
This study investigates the role of SCC3 in rice mitosis and meiosis, showing its essential function in homologous chromosome pairing and synapsis.
5 citations - GeneticseLifePeer-reviewed
Heat Stress-induced Activation of MAPK Pathway Attenuates Atf1-dependent Epigenetic Inheritance of Heterochromatin in Fission Yeast
Li Sun, Libo Liu, Chunlin Song…·Quan‐wen Jin
The paper shows heat stress disrupts heterochromatin stability at the mat locus in fission yeast by altering Atf1 phosphorylation and its interaction with Swi6HP1.
5 citations - GeneticsEMBO ReportsPeer-reviewed
DNMT3B PWWP mutations cause hypermethylation of heterochromatin
Francesca Taglini, Ioannis Kafetzopoulos, Willow Rolls…·Duncan Sproul
This study shows that DNMT3B PWWP mutations cause hypermethylation of heterochromatin marked by H3K9me3, disrupting DNA methylation homeostasis and contributing to ICF syndrome, cancer, and aging.
20 citations - GeneticsbioRxivPreprint
Repression of MRP51 in cis does not contribute to the synthetic growth defect conferred by an hphMX4-marked deletion of DBP1 in a ded1-ts mutant
Fan Zhang, Neelam Dabas Sen, Alan G. Hinnebusch
The paper shows that the synthetic growth defect in a dbp1 deletion mutant is due to loss of Dbp1, not reduced MRP51 expression from the hphMX6 marker.
DOI 10.1101/2024.01.30.578007 - GeneticsG3 Genes Genomes GeneticsPeer-reviewed
Detecting genetic effects on phenotype variability to capture gene-by-environment interactions: a systematic method comparison
This paper compares methods for detecting genetic variants affecting phenotypic variance under gene-environment interactions and identifies optimal approaches for different exposure types.
8 citations - GeneticsAntimicrobial Agents and ChemotherapyPeer-reviewed
A single locus determines praziquantel response in Schistosoma mansoni
Frédéric D. Chevalier, Winka Le Clecʼh, Matthew Berriman, Timothy J. C. Anderson
The paper reanalyzes a GWAS to show that a single locus on chromosome 3 determines praziquantel response in Schistosoma mansoni, rather than two loci.
13 citationstop 4% - GeneticsbioRxivPreprint
Long G4-rich enhancer physically interacts with EXOC3 promoter via a G4:G4 DNA-based mechanism
Jeffrey D. DeMeis, Justin T. Roberts, Haley A Delcher…·Glen Mark Borchert
The paper identifies LG4 enhancers that physically interact with gene promoters via G4:G4 DNA structures and links SNPs in these enhancers to CF lung disease severity.
DOI 10.1101/2024.01.29.577212 - GeneticsbioRxivPreprint
Impact of inter-species hybridisation on antifungal drug response in the Saccharomyces genus.
Federico Visinoni, William Royle, Rachel Scholey…·Daniela Delneri
This study investigates how hybridisation in Saccharomyces species affects antifungal drug resistance by identifying QTLs and potential causal genes involved in resistance to fluconazole, micafungin, and flucytosine.
DOI 10.1101/2024.01.29.577396 - GeneticsbioRxivPreprint
Assessing the effects of acute temperature changes of sea water temperature due to climate change on Scottish farmed Atlantic salmon and investigating genetic mitigation
Smaragda Tsairidou, Jarl van den Berg, Stephen Tapping…·Alastair Hamilton
The paper assesses the effects of acute temperature changes on Atlantic salmon health and survival, finding significant impacts on growth, survival, and maturation, and suggests genetic mitigation potential.
- GeneticsFrontiers in Plant SciencePeer-reviewed
Crop modeling suggests limited transpiration would increase yield of sorghum across drought-prone regions of the United States
Rubí Raymundo, Greg McLean, Sarah A. Sexton-Bowser…·Geoffrey P. Morris
The paper uses a crop model to show that breeding sorghum for limited transpiration could increase yield in drought-prone US regions without tradeoffs.
15 citations