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363,000+ bioRxiv and medRxiv preprints, including those later published in peer-reviewed journals, across 26 biological disciplines.
Recent preprints
- GeneticsbioRxivPreprint
Humanized nucleosomes reshape replication initiation and rDNA/nucleolar integrity in yeast
Luciana Lazar‐Stefanita, Max A. B. Haase, Jef D. Boeke
This study examines how humanized nucleosomes in yeast affect chromatin structure, replication, and rDNA stability, revealing species-specific impacts on nuclear organization and function.
5 citations - GeneticsGenetics in MedicinePeer-reviewed
Poison exon annotations improve the yield of clinically relevant variants in genomic diagnostic testing
Stephanie A. Felker, James M.J. Lawlor, Susan M. Hiatt…·Gregory M. Cooper
The paper identifies clinically relevant variants in poison exons (PEs) that improve diagnostic yield for neurodevelopmental disorders by uncovering variants previously overlooked in standard analyses.
- GeneticsPLoS GeneticsPeer-reviewed
Genetic Variation in Chromatin State Across Multiple Tissues in Drosophila melanogaster
Khoi Huynh, Brittny R. Smith, Stuart J. Macdonald, Anthony D. Long
The paper uses ATAC-seq to analyze chromatin accessibility across four tissues in eight Drosophila melanogaster genotypes, identifying polymorphic regions and candidate causal variants after correcting for structural variants.
9 citations - GeneticseLifePeer-reviewed
Interplay between PML NBs and HIRA for H3.3 dynamics following type I interferon stimulus
Constance Kleijwegt, Florent Bressac, Coline Seurre…·Armelle Corpet
The paper identifies SUMO-SIM interactions as essential for HIRA recruitment to PML NBs and shows PML NBs regulate HIRA distribution and H3.3 deposition at ISGs during IFN-I response.
- GeneticsTranslational PsychiatryPeer-reviewed
Multi-trait genome-wide association analyses leveraging alcohol use disorder findings identify novel loci for smoking behaviors in the Million Veteran Program
Youshu Cheng, Cecilia Dao, Hang Zhou…·Ke Xu
This study uses multi-trait analysis to identify novel genetic loci for smoking behaviors by leveraging alcohol use disorder GWAS data from the Million Veteran Program.
11 citations - GeneticseLifePeer-reviewed
Environment-wide and epigenome-wide association study of adiposity in "Children of 1997" birth cohort
Jie V. Zhao, Bohan Fan, Jian V. Huang…·Catherine Mary Schooling
This study identifies modifiable factors and epigenetic markers associated with adiposity in adolescents from Hong Kong using EWAS and EWAS.
12 citations - GeneticsbioRxivPreprint
Reduced frequency of clonal hematopoiesis in Parkinson's disease
Shixiang Sun, Daisy Sproviero, César Payán‐Gómez…·Jan Vijg
The paper examines the association between clonal hematopoiesis and Parkinson's disease using whole exome sequencing data from controls and patients.
2 citations - GeneticseLifePeer-reviewed
Limitations of principal components in quantitative genetic association models for human studies
This study compares PCA and LMM in genetic association models, finding LMM outperforms PCA, especially in handling complex relatedness and environmental effects in multiethnic human data.
54 citationstop 1% - GeneticsInternational Journal of Molecular SciencesPeer-reviewed
Cracking the floral quartet code: How do multimers of MIKC C-type MADS-domain transcription factors recognize their target genes?
Sandra Käppel, Florian Rümpler, Günter Theißen
The paper reviews how MIKCC-type MADS-domain transcription factors recognize target genes through different mechanisms, including dimer formation and heterotetramer binding to CArG-boxes.
- GeneticsbioRxivPreprint
Local Genetic Sex Differences in Quantitative Traits
Emil Uffelmann, Christiaan de Leeuw, Marijn Schipper, Daniëlle Posthuma
The paper identifies local genetic sex differences in quantitative traits using UK Biobank data, showing that sex-dimorphic effects are common and that the scale of genetic effects impacts heritability interpretations.
- GeneticsbioRxivPreprint
Long-read sequencing and profiling of RNA-binding proteins reveals the pathogenic mechanism of aberrant splicing of an SCN1A poison exon in epilepsy
Hannah C. Happ, Patricia N. Schneider, Jung Hwa Hong…·Gemma L. Carvill
The paper investigates how SCN1A variants in a poison exon cause aberrant splicing, reduced Nav1.1 protein, and epilepsy through RBP interactions.
2 citations - GeneticsbioRxivPreprint
Computational and experimental hunt for expansion prone tandem CNG repeats in human genomes
Varun Suroliya, Bharathram Uppili, Manish Kumar…·Mohammed Faruq
The paper combines computational and experimental methods to identify CNG repeat loci potentially linked to spinocerebellar ataxias, finding polymorphic patterns and expression in brain-related genes.
DOI 10.1101/2023.05.03.539188 - GeneticsbioRxivPreprint
A multi-network approach to Alzheimers Disease gene prioritization complements cis-regulatory prioritization with molecular quantitative trait loci
Jeffrey L. Brabec, Montana Kay Lara, Anna L. Tyler, J. Matthew Mahoney
This paper introduces a multi-network gene prioritization method for Alzheimer's Disease that complements mQTL-based approaches, showing significant concordance in prioritizing risk genes.
DOI 10.1101/2023.05.03.539189 - GeneticsbioRxivPreprint
Reversal of an existing hearing loss in mutant mice
Elisa Martelletti, Neil J. Ingham, Karen P. Steel
This study shows that a specific type of hearing loss in mice can be reversed by reactivating the Spns2 gene within a critical period, restoring auditory function and protecting hair cells.
DOI 10.1101/2023.05.02.539081 - GeneticsbioRxivPreprint
An Antagonistically Pleiotropic Gene Regulates Vertebrate Growth, Maturity and Aging
Eitan Moses, Roman Franěk, Tehila Atlan…·Itamar Harel
This study identifies vgll3 as an antagonistically pleiotropic gene in turquoise killifish, showing it accelerates growth and reproduction but increases late-life disease risk and mortality.
11 citations - GeneticsNucleic Acids ResearchPeer-reviewed
Screening for functional regulatory variants in open chromatin using GenIE-ATAC
Sarah Cooper, Jeremy Schwartzentruber, Eve L. Coomber…·Andrew Roger Bassett
The paper introduces GenIE-ATAC, a medium-throughput method to screen regulatory variants' effects on chromatin accessibility, validating causal variants and extending analysis tools.
- GeneticsThe Annals of Applied StatisticsPeer-reviewed
Leveraging Hardy-Weinberg disequilibrium for association testing in case-control studies
Lin Zhang, Lisa J. Strug, Lei Sun
The paper proposes a joint statistical test that integrates association evidence with Hardy-Weinberg disequilibrium differences between case and control groups to improve detection of disease susceptibility loci.
- GeneticsThe American Journal of Human GeneticsPeer-reviewed
The functional impact of 1,570 SNP-accessible missense variants in human OTC
Russell S. Lo, Gareth A. Cromie, Michelle Tang…·Aimée M. Dudley
The paper develops a high-throughput functional assay to assess the impact of 1,570 OTC missense variants, improving variant interpretation using ACMG/AMP guidelines.
25 citationstop 3% - GeneticsNeurobiology of AgingPeer-reviewed
Rare Genetic Variants Correlate with Better Processing Speed
Zeyuan Song, Anastasia Gurinovich, Marianne Nygaard…·Paola Sebastiani B
A GWAS identified 20 rare genetic variants associated with better processing speed in the Long Life Family Study, replicated in Danish twin cohorts.
5 citations