Author

Amandine Maire

Institut Pasteur

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetics· 1 Microbiology· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:CRISPR screen· 2 Organism:E. coli· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Research Focus:perturbation response prediction· 1

Frequent Co-Authors

David BikardiD· 3 shared Auguste Bouvier· 1 shared Baptiste DarracqiD· 1 shared Benoît ChassaingiD· 1 shared Catherine FaniD· 1 shared Céline LootiD· 1 shared Christoph DehioiD· 1 shared Didier MazeliD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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3 shared papersMicrobiology

David BikardORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Decoding E. coli's Gut Survival Strategies: A CRISPRi Approach Across Diets, Inflammatory Environment and Strains

Amandine Maire, Emma Tkacz, Monica Ortelli, Christoph Dehio, Benoît Chassaing, Harry Sokol, Nathalie Rolhion, David Bikard

This study uses CRISPRi to identify genetic factors affecting E. coli adaptation across diets, inflammation, and strains in a mouse model.

bioRxiv · Jan 5, 2026 · PreprintMicrobiology

Harnessing Diversity Generating Retroelements for in vivo targeted hyper-mutagenesis

Raphaël Laurenceau, Paul Rochette, Elena Lopez-Rodriguez, Catherine Fan, Amandine Maire, Paul Vittot, Karol Melissa Cerdas-Mejías, Auguste Bouvier, Thea Chrysostomou, David Bikard

This paper introduces DGRec, a method using DGRs to enable targeted hyper-mutagenesis in E. coli, creating diverse variants that allow evasion of phage infection.

bioRxiv · Mar 24, 2025 · PreprintSynthetic Biology

Fine-tuning of a CRISPRi screen in the seventh pandemic Vibrio cholerae

Kevin Debatisse, Théophile Niault, Sarah Peeters, Amandine Maire, Baptiste Darracq, Zeynep Baharoglu, David Bikard, Didier Mazel, Céline Loot

The paper fine-tunes a CRISPRi screen in Vibrio cholerae to enable pooled genome-wide screening with minimal cytotoxicity and identifies 368 essential genes.

bioRxiv · Jul 3, 2024 · PreprintGenetics