Author

Biswa Choudhury

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 2 Microbiology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Organism:human· 3 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Mousumi Paulchakrabarti· 3 shared Alejandro Gómez ToledoiD· 2 shared Jeffrey D. EskoiD· 2 shared Abigail E. RogersiD· 1 shared Adriana Vasquez AyalaiD· 1 shared Anja Münster-Kühnel· 1 shared Ann‐Christine DuhaimeiD· 1 shared Caitlin TribelhorniD· 1 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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3 shared papersNeuroscience

Mousumi Paulchakrabarti

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Author profile →

4 papers

Recent·Most cited

Release of extracellular matrix components after human traumatic brain injury

Michael Bambrick, Deena S. Godfrey, Mark D. Johnson, Jeffrey D. Esko, Biswa Choudhury, Alejandro Gómez Toledo, Mousumi Paulchakrabarti, Carla Fortes, Kevin J. Staley, Ann‐Christine Duhaime

This study measures sulfated glycosaminoglycan (sGAG) levels in ventricular CSF, blood, and urine of TBI patients to assess extracellular matrix damage and its correlation with injury characteristics.

eNeuro · Jun 1, 2025Peer-reviewedNeuroscience

Multi-omic analysis reveals the unique glycan landscape of the blood-brain barrier glycocalyx

Reid O. Larsen, Krzysztof Kucharz, Sidar Aydin, Mariel Kristine B Micael, Biswa Choudhury, Mousumi Paulchakrabarti, Micael Lønstrup, Donghai Lin, Markus Abeln, Anja Münster-Kühnel, Alejandro Gómez Toledo, Martin Lauritzen, Jeffrey D. Esko, Richard Daneman

The paper analyzes the BBB glycocalyx using multi-omic approaches, revealing unique glycan composition and structural features, and their potential role in neuroinflammation.

bioRxiv · Apr 7, 2025 · PreprintMolecular Biology

Pathogenic Bacteroides fragilis strains can emerge from gut-resident commensals

Renee E. Oles, Marvic Carrillo Terrazas, Luke R. Loomis, Maxwell J. Neal, Mousumi Paulchakrabarti, Simone Zuffa, Chia-Yun Hsu, Adriana Vasquez Ayala, Michael Hweemoon Lee, Caitlin Tribelhorn, Pedro Belda‐Ferre, MacKenzie Bryant, Jasmine Zemlin, Jocelyn Young, Parambir Singh Dulai, , Hiutung Chu

This study identifies genetic factors enabling Bacteroides fragilis to transition from commensal to pathogenic by analyzing 813 strains and their genomic diversity.

bioRxiv · Jun 19, 2024 · PreprintMicrobiology

THAP1 Modulates Oligodendrocyte Maturation by Regulating ECM Degradation in Lysosomes

Dhananjay Yellajoshyula, Samuel S. Pappas, Abigail E. Rogers, Biswa Choudhury, Xylena Reed, Jinhui Ding, Mark Cookson, Vikram G. Shakkottai, Roman J. Giger, William T. Dauer

This study shows THAP1 regulates oligodendrocyte maturation by controlling lysosomal degradation of glycosaminoglycans in OPCs.

Proceedings of the National Academy of Sciences · Jul 26, 2021Peer-reviewedNeuroscience