Author

D. S. Rokhsar

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3 Cell Biology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:chromatin & epigenetic regulation· 3 Assay:whole-genome sequencing· 2 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:development & morphogenesis· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

F. Marletaz· 3 shared J. J. Tena· 2 shared A. Andrescavage· 1 shared A. F. Dernburg· 1 shared A. Gonzalez-Rajal· 1 shared A. K. Baskevitch· 1 shared A. Perez-Posada· 1 shared A. Schultink· 1 shared

Activity by Year

2021-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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3 shared papersEvolutionary Biology

F. Marletaz

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Chromosome-level genome assemblies of two hemichordates provide new insights into deuterostome origin and chromosome evolution

C.-Y. Lin, F. Marletaz, A. Perez-Posada, P. M. Martinez Garcia, S. Schloissnig, P. Peluso, G. T. Conception, P. Bump, Y.-C. Chen, C. Chou, C.-Y. Lin, T.-P. Fan, C.-T. Tsai, J. L. Gomez Skarmeta, J. J. Tena, , Y.-H. Su

This study presents chromosome-level genome assemblies of two hemichordates to infer deuterostome ancestral chromosomal architecture and lineage-specific modifications.

bioRxiv · Nov 1, 2023Evolutionary Biology

A single-cell atlas of bobtail squid visual and nervous system highlights molecular principles of convergent evolution

D. Gavriouchkina, Y. Tan, F. Künzli-Ziadi, Y. Hasegawa, L. Piovani, L. Zhang, C. Sugimoto, N. Luscombe, F. Marletaz, D. S. Rokhsar

This study uses single-cell transcriptomics to analyze the visual and nervous system of the bobtail squid, revealing novel cell types and molecular mechanisms of convergent evolution in visual systems.

bioRxiv · May 26, 2022Evolutionary Biology

The little skate genome and the evolutionary emergence of wing-like fin appendages

F. Marletaz, E. de la Calle-Mustienes, R. D. Acemel, T. Nakamura, C. Paliou, S. Naranjo, P. M. Martinez-Garcia, I. Cases, V. A. Sleight, C. Hirschberger, M. Marcet-Houben, D. Navon, A. Andrescavage, K. Skvortsova, P. E. Duckett, , J. L. Gomez-Skarmeta

This study identifies genomic rearrangements and regulatory changes in the little skate that contribute to the evolution of wing-like fin appendages.

bioRxiv · Mar 21, 2022 · PreprintEvolutionary Biology

CRISPR-Cas9-mediated knockout of CYP79D1 and CYP79D2 in cassava attenuates toxic cyanogen production

M. A. Gomez, K. C. Berkoff, B. K. Gill, A. T. Iavarone, S. E. Lieberman, J. M. Ma, A. Schultink, S. K. Wyman, R. D. Chauhan, N. J. Taylor, B. J. Staskawicz, M.-J. Cho, D. S. Rokhsar, J. B. Lyons

This study uses CRISPR-Cas9 to knockout CYP79D1 and CYP79D2 in cassava, reducing cyanide production and improving food safety.

bioRxiv · Oct 8, 2021Plant Biology

Analysis of meiosis in Pristionchus pacificus reveals plasticity in homolog pairing and synapsis in the nematode lineage

R. Rillo-Bohn, R. Adilardi, T. Mitros, L. Stevens, B. Avsaroglu, S. Kohler, J. Bayes, C. Wang, S. Lin, A. K. Baskevitch, D. S. Rokhsar, A. F. Dernburg

The paper analyzes meiosis in Pristionchus pacificus, showing that DMC-1 and RAD-51 have distinct roles in homolog pairing and synapsis compared to C. elegans.

bioRxiv · Jun 2, 2021Cell Biology