Author

E. K. Allen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 2 Cancer Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Research Focus:host-pathogen & immune response· 2 Organism:human· 2 Assay:spatial transcriptomics· 2

Frequent Co-Authors

S. Schultz-Cherry· 3 shared A. Balmaseda· 2 shared A. Gordon· 2 shared A. Souquette· 2 shared G. Kuan· 2 shared P. G. Thomas· 2 shared P. Thomas· 2 shared A. Bahrami· 1 shared

Activity by Year

2021-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersMicrobiology

S. Schultz-Cherry

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Diet-induced obesity impacts influenza disease severity and transmission dynamics in ferrets

V. A. Meliopoulos, R. Honce, B. Livingston, V. Hargest, P. Freiden, L. Lazure, P. H. Brigleb, E. A. Karlsson, H. Tillman, E. K. Allen, D. Boyd, P. Thomas, S. Schultz-Cherry

This study shows diet-induced obesity in ferrets increases influenza disease severity and transmission due to altered lung microenvironment and reduced antiviral responses.

bioRxiv · Sep 26, 2023 · PreprintMicrobiology

Integrated Drivers of Basal and Acute Immunity in Diverse Human Populations

A. Souquette, E. K. Allen, C. M. Oshansky, L. Tang, S.-s. Wong, T. Jeevan, L. Shi, S. Pounds, G. Elias, G. Kuan, A. Balmaseda, R. Zapata, K. Shaw-Saliba, P. Van Damme, V. Van Tendeloo, , P. G. Thomas

The paper examines factors influencing immunity across diverse populations, finding ancestry and age significantly affect immune responses and disease severity.

bioRxiv · Mar 25, 2023Immunology

Combining genotypes and T cell receptor distributions to infer genetic loci determining V(D)J recombination probabilities

M. L. Russell, A. Souquette, D. M. Levine, E. K. Allen, G. Kuan, N. Simon, A. Balmaseda, A. Gordon, P. Thomas, F. A. Matsen, P. G. Bradley

The paper infers genetic loci influencing V(D)J recombination probabilities by combining TCR repertoires and genome-wide genotypes from a human cohort.

bioRxiv · Sep 17, 2021Immunology

Neuroblastoma formation requires unconventional CD4 T cells and myeloid amino acid metabolism

L.-A. Van de Velde, E. K. Allen, J. C. Crawford, T. L. Wilson, C. S. Guy, M. Russier, L. Zeitler, A. Bahrami, D. Finkelstein, S. Pelletier, S. Schultz-Cherry, P. G. Thomas, P. J. Murray

This study identifies unconventional CD4 T cells and myeloid amino acid metabolism as critical for neuroblastoma formation using a mouse model and spatial transcriptomics.

bioRxiv · Feb 8, 2021Cancer Biology