Author

Peter Aspesi

ORCID 0000-0002-1987-6446Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:experimental assay· 2 Research Focus:database / resource· 1 Organism:human· 1 Assay:imaging· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Felipa MapaiD· 2 shared Adam P. SkepneriD· 1 shared Alan Williams· 1 shared Allen Cornett· 1 shared Amy B. GoodaleiD· 1 shared Anita VrciciD· 1 shared Anne Elizabeth CarpenteriD· 1 shared Ansgar SchuffenhaueriD· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersSystems Biology

Felipa MapaORCID

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3 papers

Recent·Most cited

Application of Cancer Cell Line Encyclopedia for Measuring Correlation Between Transcriptomics and Proteomics as a Guide for System-level Insights

Blake Williams, Darryl Perry, Peter Aspesi, Jefferson Parker, Ted Johnson, Wendy Weiqun Su, Eduardo Tabacman, Kirk Delisle, Kayvon Avishan, Vic E. Myer, Felipa Mapa, Michael Hinterberg, Alan Williams, Lori L. Jennings, Nebojša Janjić, Joseph Loureiro

The paper evaluates the SomaScan proteome profiling platform using CCLE cancer cell lines, showing its ability to distinguish cell lines by proteome signatures and correlate with transcriptome data.

bioRxiv · Mar 3, 2024 · PreprintSystems Biology

Optimizing the Cell Painting assay for image-based profiling

Beth A. Cimini, Srinivas Niranj Chandrasekaran, Maria Kost‐Alimova, Lisa Miller, Amy B. Goodale, Briana Fritchman, Patrick J. Byrne, Sakshi Garg, Nasim Jamali, David J. Logan, John B. Concannon, Charles-Hugues Lardeau, Elizabeth Mouchet, Shantanu Singh, Hamdah Shafqat Abbasi, , Anne Elizabeth Carpenter

The paper updates the Cell Painting assay protocol to improve morphological profiling, finding that simplified steps and reduced stain concentrations maintain robust outputs.

Nature Protocols · Jun 21, 2023Peer-reviewedBioinformatics

Systematic Chemogenetic Library Assembly

Stephen M. Canham, Yuan Wang, Allen Cornett, Douglas S. Auld, Daniel K. Baeschlin, Maude Patoor, Philip R. Skaanderup, Ayako Honda, Luis Llamas, Greg Wendel, Felipa Mapa, Peter Aspesi, Nancy Labbé-Giguère, Gabriel G. Gamber, Daniel S. Palacios, , Jeremy L. Jenkins

The paper describes the assembly of a chemogenetic library through data mining and crowdsourcing, sharing 4186 compounds with annotated gene targets.

Cell chemical biology · Jul 23, 2020Peer-reviewedBioinformatics