Author

So I Nagaoka

Nara Medical UniversityORCID 0000-0002-2377-4936Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 4 Research Focus:differential expression· 4 Organism:mouse· 4 Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

Kazuki KurimotoiD· 2 shared Mitinori SaitouiD· 2 shared Tomoya TakashimaiD· 2 shared Antoine H.F.M. PetersiD· 1 shared Anton WutziD· 1 shared Antonio TarruelliD· 1 shared Ayuko UchikuraiD· 1 shared Bernhard PayeriD· 1 shared

Activity by Year

2022-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersGenomics

Kazuki KurimotoORCID

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Author profile →

4 papers

Recent·Most cited

Post-fertilization transcription initiation in an ancestral LTR retrotransposon drives lineage-specific genomic imprinting of ZDBF2

Hisato Kobayashi, Tatsushi Igaki, Soichiro Kumamoto, Keisuke Tanaka, Tomoya Takashima, So I Nagaoka, Shunsuke Suzuki, Masaaki Hayashi, Marilyn B. Renfree, Manabu Kawahara, Shun Saito, Toshihiro Kobayashi, Hiroshi Nagashima, Hitomi Matsunari, Kazuaki Nakano, , Kazuki Kurimoto

The paper shows that an ancestral LTR retrotransposon insertion in the common ancestor of Euarchontoglires drives lineage-specific genomic imprinting of ZDBF2 through post-fertilization transcription initiation.

eLife · Jun 2, 2025Peer-reviewedGenomics

Comprehensive comparison of female germ cell development in vitro and in vivo identifies epigenetic gene regulation crucial for oocyte development and embryonic competence

Eishi Aizawa, Evgeniy A. Ozonov, Yumiko Kawamura, Charles-Étienne Dumeau, So I Nagaoka, Tomoya S. Kitajima, Mitinori Saitou, Antoine H.F.M. Peters, Anton Wutz

The EMBO Journal · Oct 18, 2023Peer-reviewedDevelopmental Biology

Histology-associated transcriptomic heterogeneity in ovarian folliculogenesis revealed by quantitative single-cell RNA-sequencing for tissue sections with DRaqL

Hiroki Ikeda, Shintaro Miyao, So I Nagaoka, Tomoya Takashima, Sze-Ming Law, Takuya Yamamoto, Kazuki Kurimoto

The paper develops DRaqL, a method for efficient single-cell RNA-seq from fixed tissue sections, revealing transcriptomic heterogeneity in ovarian folliculogenesis.

Life Science Alliance · Sep 18, 2023Peer-reviewedDevelopmental Biology

A temporally controlled sequence of X-chromosomeinactivation and reactivation defines female mouse in vitro germ cells with meiotic potential

Jacqueline Severino, Moritz Bauer, Tom Mattimoe, Niccolò Arecco, Luca Cozzuto, Patricia Lorden, Norio Hamada, Yoshiaki Nosaka, So I Nagaoka, Pauline N. C. B. Audergon, Antonio Tarruell, Holger Heyn, Katsuhiko Hayashi, Mitinori Saitou, Bernhard Payer

This study investigates X-chromosome inactivation and reactivation dynamics in female mouse PGCLCs, showing that a precise temporal sequence is critical for meiotic potential.

The EMBO Journal · May 23, 2022Peer-reviewedDevelopmental Biology