Author
Damian C. Ekiert
Johns Hopkins UniversityORCID 0000-0002-2570-0404Unclaimed ORCID profile · follow to get notified of new preprints
Biology Disciplines
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2024-2026 · peak 5/yrCo-Author Collaboration Network
10 top collaborators · 21 mutual co-author links10 papers
Recent·Most cited
Single-cell transcriptomics of Encephalitozoon intestinalis infection in Caco-2 and Vero cells
Noelle V. Antao, Gira Bhabha, Damian C. Ekiert
The paper uses scRNA-seq to study host and parasite transcriptional responses to Encephalitozoon intestinalis infection in Caco-2 and Vero cells, finding limited host response and a parasite developmental program.
bioRxiv · Sep 20, 2026 · PreprintMicrobiology
Interactions of outer membrane lipoproteins P. aeruginosa PA3214 and E. coli PqiC with their MCE protein binding partners, PA3213 and PqiB
Sabrina I. Giacometti, Nicolas Coudray, Rachel L. Redler, Gira Bhabha, Damian C. Ekiert
The paper reports cryo-EM structures of P. aeruginosa PA3214 and E. coli PqiC lipoproteins interacting with their MCE protein partners, revealing their assembly and functional interactions.
Journal of Biological Chemistry · Aug 25, 2026Peer-reviewedMicrobiology
Polar tube firing dynamics and ultrastructure from the shrimp microsporidian Ecytonucleospora hepatopenaei (EHP)
Nutthapon Sangklai, Thanamon Udomphonphaibun, Krittapron Keawpanya, Paris Watson, Nicolas Coudray, Maia A. Koliopoulos, Orawan Thepmanee, Arun Kumar Dhar, Damian C. Ekiert, Gira Bhabha, Anchalee Tassanakajon, Pattana Jaroenlak
This study investigates the polar tube firing dynamics and ultrastructure of EHP, identifying optimal activation conditions and revealing structural features important for infection.
Aquaculture · Mar 20, 2026Peer-reviewedMicrobiology
Bond-centric modular design of protein assemblies
Shunzhi Wang, Andrew Favor, Ryan D. Kibler, Joshua M. Lubner, Andrew J. Borst, Nicolas Coudray, Rachel L. Redler, Huat Thart Chiang, William Sheffler, Yang Hsia, Neville P. Bethel, Zhe Li, Damian C. Ekiert, Gira Bhabha, Lilo D. Pozzo, David A. Baker
The paper introduces a modular bond-centric design approach for protein assemblies, demonstrating the successful creation of multiple polyhedral cages, 2D arrays, and 3D lattices with high success rates.
Nature Materials · Jul 31, 2025Peer-reviewedBiochemistry
scRNA-seq reveals transcriptional dynamics of Encephalitozoon intestinalis parasites in human macrophages
Pattana Jaroenlak, Kacie L McCarty, Bo Xia, Cherry Lam, Erin E. Zwack, Nadia L Almasri, Joseph C. Sudar, Maelle Aubry, Itai Yanai, Gira Bhabha, Damian C. Ekiert
This study uses scRNA-seq to analyze transcriptional changes in human macrophages and Encephalitozoon intestinalis parasites during infection, revealing parasite developmental dynamics and host response.
Nature Communications · Apr 5, 2025Peer-reviewedMicrobiology
LetA defines a structurally distinct transporter family involved in lipid trafficking
Cristina Santarossa, Yupeng Li, Sara Yousef, Hale S. Hasdemir, Carlos C. Rodriguez, Max B. Haase, Minkyung Baek, Nicolas Coudray, John G. Pavek, Kimber N. Focke, Annika L. Silverberg, Carmelita Bautista, Johannes T.‐H. Yeh, Michael Thomas Marty, David A. Baker, , Gira Bhabha
The paper determines the structure of E. coli LetAB, identifies LetA as a novel transporter family, and proposes a mechanism for lipid transport using proton-motive force.
bioRxiv · Mar 21, 2025 · PreprintBiophysics
Cryo-ET reveals the in situ architecture of the polar tube invasion apparatus from microsporidian parasites
Mahrukh Usmani, Nicolas Coudray, Margot Riggi, Rishwanth Raghu, Harshita Ramchandani, Daija Bobe, Mykhailo Kopylov, Ellen D. Zhong, Janet Iwasa, Damian C. Ekiert, Gira Bhabha
The paper uses cryo-electron tomography to reveal the in situ architecture of the polar tube invasion apparatus in microsporidian parasites.
Proceedings of the National Academy of Sciences · Mar 11, 2025Peer-reviewedMicrobiology
Characterization of a cytokinin-binding protein locus in Mycobacterium tuberculosis
Jin Hee Yoo, Cristina Santarossa, Audrey Thomas, Damian C. Ekiert, K. Heran Darwin
The paper identifies a cytokinin-binding protein in M. tuberculosis and shows it binds cytokinins with high specificity, suggesting cytokinins may have roles in mycobacterial physiology.
Journal of Bacteriology · Feb 27, 2025Peer-reviewedMicrobiology
Identification of a proteolysis regulator for an essential enzyme in Mycobacterium tuberculosis
Shoshanna C. Kahne, Jin Hee Yoo, James Chen, Kehilwe C. Nakedi, Lakshminarayan M. Iyer, Gregory Putzel, Nora M. Samhadaneh, Alejandro Pironti, L. Aravind, Damian C. Ekiert, Gira Bhabha, Kyu Young Rhee, K. Heran Darwin
The paper identifies CoaX, a pseudokinase, and pantothenate as regulators of proteasomal degradation of the pantothenate synthesis enzyme PanB in M. tuberculosis.
Proceedings of the National Academy of Sciences · Nov 25, 2024Peer-reviewedMicrobiology