Author

Daisuke Kawauchi

University of California San DiegoORCID 0000-0002-7679-173XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Frank B. FurnariiD· 2 shared Abhinaba Banerjee· 1 shared Alan G. MackayiD· 1 shared B. Jones· 1 shared Benjamin LiniD· 1 shared Bharath SaravananiD· 1 shared Bing ReniD· 1 shared Bogdan BintuiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersGenomics

Frank B. FurnariORCID

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2 papers

Recent·Most cited

Single-molecule spatial genomics reveals the multi-scale organization and plasticity of extrachromosomal DNA in glioblastoma

Brett Taylor, Weixiu Dong, Tula Ann Keal, Zhaoning Wang, Bharath Saravanan, Zane A. Gibbs, Yohei Miyake, Daisuke Kawauchi, Raghavendra Vadla, Abhinaba Banerjee, Omar M. Elkassih, Sahana Kashyap, B. Jones, Kseniya Malukhina, Mahsa Nafisi, , Bogdan Bintu

This study uses single-molecule spatial genomics to show how extrachromosomal DNA is organized and regulated in glioblastoma, linking it to tumor heterogeneity and microenvironmental influences.

bioRxiv · Mar 7, 2026 · PreprintGenomics

Cooperativity between H3.3K27M and PDGFRA poses multiple therapeutic vulnerabilities in human iPSC-derived diffuse midline glioma avatars

Kasey Skinner, Tomoyuki Koga, Shunichiro Miki, Robert F. Gruener, Florina Grigore, Emma H. Torii, Davis M. Seelig, Yuta Suzuki, Daisuke Kawauchi, Benjamin Lin, Denise M. Malicki, Clark C. Chen, Etty N. Benveniste, Rakesh P. Patel, Braden C. McFarland, , Frank B. Furnari

This study develops human iPSC-derived tumor models to investigate the cooperative effects of H3.3K27M and PDGFRA mutations in DMG, identifying therapeutic vulnerabilities.

bioRxiv · Feb 24, 2023 · PreprintGenomics