bioRxivNeurosciencePreprint
GESIAP: A Versatile Genetically Encoded Sensor-based Image Analysis Program
Wenxi ZhengiD, Yajun ZhangiD, Roger E. ZhuiD, Peng ZhangiD, Smriti Nagpal GuptaiD, Limeng HuangiD, Deepika Sahoo, Kaiming GuoiD, Matthew E. GloveriD, Krishna C. VadodariaiD, Mengyao LiiD, Tongrui QianiD, Miao JingiD, Jiesi FengiD, Jinxia WaniD, Philip M. BordeniD, Farhan AliiD, Alex C. KwaniD, Li Gan, Li LiniD, Fred H. GageiD, B. Jill VentoniD, Jonathan S. MarviniD, Kaspar PodgorskiiD, Sarah M. ClintoniD, , Jie ZhuiD
Abstract
Intercellular communication mediated by a large number of neuromodulators diversifies physiological actions, yet neuromodulation remains poorly understood despite the recent upsurge of genetically encoded transmitter sensors. Here, we report the development of a versatile genetically encoded sensor-based image analysis program (GESIAP) that utilizes MATLAB-based algorithms to achieve high-throughput, high-resolution processing of sensor-based functional imaging data. GESIAP enables delineation of fundamental properties (e.g., transmitter spatial diffusion extent, quantal size, quantal content, release probability, pool size, and refilling rate at single release sites) of transmission mediated by various transmitters (i.e., monoamines, acetylcholine, neuropeptides, and glutamate) at various cell types (i.e., neurons, astrocytes, and other non-neuronal cells) of various animal species (i.e., mouse, rat, and human). Our analysis appraises a dozen of newly developed transmitter sensors, validates a conserved model of restricted non-volume neuromodulatory synaptic transmission, and accentuates a broad spectrum of presynaptic release properties that variegate neuromodulation.
- organism: mouse
- organism: rat
- organism: human
- assay: imaging
- research focus: cell type annotation
- research focus: differential expression
- research focus: gene regulatory network inference
- research focus: cell-cell communication
- approach: experimental assay
- Citations
- 5
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