Author

Alireza Khademi

University of Toronto

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genomics· 2 Cancer Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Organism:Drosophila· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

Howard D. LipshitziD· 2 shared Agata L. PatriotisiD· 1 shared Amy E. KeatingiD· 1 shared Angelo KaraiskakisiD· 1 shared Arianna Arroyo-Ortega· 1 shared Colin E FowleriD· 1 shared Craig A. SmibertiD· 1 shared Daniel Lee· 1 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Howard D. LipshitzORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Switch-TRIBE: Lineage-specific high-resolution profiling of endogenous RNA-protein interactions

Yichao Hu, Alireza Khademi, Xiaohang Yang, Howard D. Lipshitz

Switch-TRIBE profiles RNA-protein interactions in Drosophila neural stem cells, identifying cell-type specific targets and revealing regulatory strategies of RBPs in neurogenesis.

bioRxiv · Jul 30, 2026 · PreprintGenomics

Multiomic screening platform uncovers the impact of histone mutations on chromatin and cell fate

Ziyang Ye, Alireza Khademi, Renée Louane Barbosa, Foster Birnbaum, Margaret R. Brown, Colin E Fowler, Arianna Arroyo-Ortega, Daniel Lee, Lijuan Feng, Leah A. Gates, Agata L. Patriotis, Amy E. Keating, Francisco J. Sánchez Rivera, Yadira M. Soto‐Feliciano

This study develops CHANCLA, a multiomic platform to screen oncohistones, revealing their impact on chromatin and cell fate through functional and structural analyses.

bioRxiv · Apr 17, 2026 · PreprintCancer Biology

The RNA-binding protein, Rasputin/G3BP, enhances the stability and translation of its target mRNAs

John D. Laver, Jimmy Ly, Jamie K. Winn, Angelo Karaiskakis, Sichun Lin, Kun Nie, Giulia Benic, Nima Jaberi-Lashkari, Wen Xi Cao, Alireza Khademi, J. Timothy Westwood, Sachdev S. Sidhu, Quaid Morris, Stéphane Angers, Craig A. Smibert, Howard D. Lipshitz

This study identifies RIN/G3BP-bound mRNAs in Drosophila and shows they are short, stable, and highly translated, suggesting RIN stabilizes and enhances their translation.

Cell Reports · Mar 1, 2020Peer-reviewedGenomics