Author

H. Tamaki

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 7 Biophysics· 1 Immunology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 6 Organism:bacteria (other)· 3 Research Focus:cell type annotation· 3 Research Focus:chromatin & epigenetic regulation· 3 Approach:statistical model· 3 Assay:DNA methylation· 2 Assay:metagenomics· 2 Organism:Arabidopsis· 1

Frequent Co-Authors

M. K. Nobu· 3 shared Y. Kamagata· 3 shared A. Toyoda· 2 shared C. Kadooka· 2 shared K. Mori· 2 shared K. Okutsu· 2 shared K. Takamine· 2 shared M. Goto· 2 shared

Activity by Year

2019-2022 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersMicrobiology

M. K. Nobu

Mutual co-authors in cluster

Author profile →

10 papers

Recent·Most cited

Long-read-resolved, ecosystem-wide exploration of nucleotide and structural microdiversity of lake bacterioplankton genomes

Y. Okazaki, S.-i. Nakano, A. Toyoda, H. Tamaki

The paper explores microdiversity in lake bacterioplankton genomes using long-read sequencing and identifies factors driving genomic diversification, finding that viral load drives diversity while population bottlenecks constrain it.

bioRxiv · Mar 23, 2022Microbiology

Conformational switch in the alpha-synuclein C-terminus domain directs its fibril polymorphs

C. Aguirre, Y. Miyanoiri, M. So, H. Tamaki, T. Maruno, J. Doi, N. Wang, K. Yamaguchi, K. Nakajima, Y. Yamamori, H. Inoura, C.-J. Choong, K. Kakuda, T. Ajiki, Y. Kimura, , H. Mochizuki

This study identifies a conformational switch in the alpha-synuclein C-terminus domain that determines fibril polymorphs by altering morphology in response to ionic strength and temperature.

bioRxiv · Feb 10, 2022 · PreprintBiophysics

Protein kinase Cδ is essential for the IgG response against T cell-independent type 2 antigens and commensal bacteria

D. Kitamura, S. Fukao, K. Haniuda, H. Tamaki

This study shows that PKCδ is required for IgG responses to TI-2 antigens and commensal bacteria, but not T cell-dependent antigens.

bioRxiv · Jul 20, 2021Immunology

Unique metabolic strategies in Hadean analogues reveal hints for primordial physiology

M. K. Nobu, R. Nakai, S. Tamazawa, H. Mori, A. Toyoda, A. Ijiri, S. Suzuki, K. Kurokawa, Y. Kamagata, H. Tamaki

The paper investigates metabolic strategies in Hadean analogues, revealing unique non-CO2-reducing pathways that may inform primordial physiology.

bioRxiv · Apr 20, 2021 · PreprintMicrobiology

Overexpression of the RNA-binding protein NrdA affects global gene expression and secondary metabolism in Aspergillus species

C. Kadooka, K. Izumitsu, T. Asai, K. Mori, K. Okutsu, Y. Yoshizaki, K. Takamine, M. Goto, H. Tamaki, T. Futagami

This study shows that overexpression of NrdA affects global gene expression and secondary metabolism in Aspergillus species, with specific impacts on metabolite production.

bioRxiv · Mar 15, 2021 · PreprintMicrobiology

Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing

Y. Okazaki, S. Fujinaga, M. M. Salcher, C. Callieri, A. Tanaka, A. Kohzu, H. Oyagi, H. Tamaki, S.-i. Nakano

This study uses long-read amplicon sequencing to reveal microdiversity and phylogeographic patterns in freshwater bacterioplankton lineages across lakes in Japan and Europe.

Microbiome · Jan 22, 2021Peer-reviewedMicrobiology

Temperature-dependent fasciation mutants connect mitochondrial RNA processing to the control of cell proliferation during lateral root morphogenesis

K. Otsuka, A. Mamiya, M. Konishi, M. Nozaki, A. Kinoshita, H. Tamaki, M. Arita, M. Saito, K. Yamamoto, T. Hachiya, K. Noguchi, T. Ueda, Y. Yagi, T. Kobayashi, T. Nakamura, , M. Sugiyama

bioRxiv · Jun 9, 2020 · PreprintPlant Biology

LaeA controls citric acid production through regulation of a citrate exporter encoding cexA in Aspergillus luchuensis mut. kawachii

C. Kadooka, E. Nakamura, K. Mori, K. Okutsu, Y. Yoshizaki, K. Takamine, M. Goto, H. Tamaki, T. Futagami

This study identifies LaeA's role in regulating citric acid production in A. kawachii by controlling cexA expression through histone methylation.

bioRxiv · Aug 28, 2019Microbiology

Membrane-bounded nucleoid discovered in a cultivated bacterium of the candidate phylum ‘Atribacteria’

T. Katayama, M. K. Nobu, H. Kusada, X.-Y. Meng, H. Yoshioka, Y. Kamagata, H. Tamaki

The paper reports the discovery of a membrane-bounded nucleoid in a cultivated bacterium from the candidate phylum Atribacteria, challenging the traditional view of prokaryotic cell structure.

bioRxiv · Aug 8, 2019 · PreprintMicrobiology

Isolation of an archaeon at the prokaryote-eukaryote interface

H. Imachi, M. K. Nobu, N. Nakahara, Y. Morono, M. Ogawara, Y. Takaki, Y. Takano, K. Uematsu, T. Ikuta, M. Ito, Y. Matsui, M. Miyazaki, K. Murata, Y. Saito, S. Sakai, , K. Takai

The paper isolates an Asgard archaeon and proposes a symbiosis model for eukaryogenesis based on its morphology and metabolism.

bioRxiv · Aug 8, 2019Microbiology