Author

Hala S. Abdouni

Mount Sinai Hospital

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Systems Biology· 4

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Approach:experimental assay· 4 Organism:human· 3 Assay:proteomics· 3 Research Focus:protein design· 2 Research Focus:protein structure prediction· 2 Research Focus:cell-cell communication· 1 Assay:CRISPR screen· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Anne‐Claude GingrasiD· 4 shared Caroline DemeretiD· 2 shared Cassandra J. WongiD· 2 shared Dae‐Kyum KimiD· 2 shared Frederick P. RothiD· 2 shared Jennifer J. KnappiD· 2 shared Patricia CassonnetiD· 2 shared Payman Samavarchi‐TehraniiD· 2 shared

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2020-2021 · peak 3/yr

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Anne‐Claude GingrasORCID

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4 papers

Recent·Most cited

A toolbox for efficient proximity-dependent biotinylation in zebrafish embryos

Shimon M. Rosenthal, Tvisha Misra, Hala S. Abdouni, Tess Caroline Branon, Alice Y. Ting, Ian C. Scott, Anne‐Claude Gingras

The paper develops and benchmarks in vivo TurboID and miniTurbo labeling in zebrafish embryos for proximity-dependent biotinylation, enabling protein discovery in living vertebrates.

Molecular & Cellular Proteomics · Jan 1, 2021Peer-reviewedSystems Biology

A SARS-CoV-2 - host proximity interactome

Payman Samavarchi‐Tehrani, Hala S. Abdouni, James D.R. Knight, Audrey Astori, Reuben Samson, Zhen‐Yuan Lin, Dae‐Kyum Kim, Jennifer J. Knapp, Jonathan R. St‐Germain, Christopher D. Go, Brett G. Larsen, Cassandra J. Wong, Patricia Cassonnet, Caroline Demeret, Yves Jacob, , Anne‐Claude Gingras

Proximity-dependent biotinylation of 27 SARS-CoV-2 proteins in A549 cells maps 7810 virus-host proximity interactions across 2242 host proteins, including membrane-associated partners missed by affinity purification.

bioRxiv · Sep 3, 2020 · PreprintSystems Biology

Global BioID-based SARS-CoV-2 proteins proximal interactome unveils novel ties between viral polypeptides and host factors involved in multiple COVID19-associated mechanisms

Estelle M. N. Laurent, Yorgos Sofianatos, Anastassia V. Komarova, Jean‐Pascal Gimeno, Payman Samavarchi‐Tehrani, Dae‐Kyum Kim, Hala S. Abdouni, Marie Duhamel, Patricia Cassonnet, Jennifer J. Knapp, Da Kuang, Aditya Chawla, Dayag Sheykhkarimli, Ashyad Rayhan, Roujia Li, , Étienne Coyaud

Proximity-dependent biotinylation (BioID) of 28 SARS-CoV-2 proteins in human cells maps 5,415 proximal interactions with 2,128 host targets across basal and poly(I:C) conditions.

bioRxiv · Aug 28, 2020 · PreprintSystems Biology

Systematic mapping of genetic interactions for de novo fatty acid synthesis

Michael Aregger, Keith A. Lawson, Maximilian Billmann, Michael Costanzo, Amy H.Y. Tong, Katherine Chan, Mahfuzur Rahman, Kevin R. Brown, Catherine Ross, Matej Ušaj, Lucy Nedyalkova, Olga S. Sizova, Andrea Habsid, Judy Pawling, Zhen‐Yuan Lin, , Jason Moffat

This study maps genetic interactions in FASN-deficient cells to identify genes involved in lipid uptake and metabolic adaptation.

Nature Metabolism · Jun 1, 2020Peer-reviewedSystems Biology