Author

H. Honda

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 2 Bioengineering· 1 Biophysics· 1 Cell Biology· 1 Ecology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 6 Assay:bulk RNA-seq· 4 Research Focus:cell type annotation· 4 Approach:statistical model· 3 Research Focus:cell signaling & trafficking· 2 Research Focus:drug response / drug discovery· 2 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2

Frequent Co-Authors

H. Kobayashi· 2 shared K. Shimizu· 2 shared M. Yamamoto· 2 shared M. Yamane· 2 shared R. Tabata· 2 shared S. Okamoto· 2 shared A. Iwama· 1 shared A. Nakamura-Ishizu· 1 shared

Activity by Year

2020-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersCell Biology

H. Kobayashi

Mutual co-authors in cluster

Author profile →

8 papers

Recent·Most cited

Deciphering mechanisms of UV filter- and temperature-induced bleaching in the coral Acropora tenuis, using ecotoxicogenomics

S. Nishioka, K. Miyata, Y. Inoue, K. Aoyama, Y. Yoshioka, N. Miura, M. Yamane, H. Honda, T. Takagi

This study investigates the effects of UV filter BP-3 and thermal stress on coral Acropora tenuis using RNA-seq, identifying gene expression differences and potential markers for bleaching.

bioRxiv · Nov 5, 2023 · PreprintEcology

Context-Dependent Modification of PFKFB3 in Hematopoietic Stem Cells Promotes Anaerobic Glycolysis and Ensures Stress Hematopoiesis

S. Watanuki, H. Kobayashi, Y. Sugiura, M. Yamamoto, D. Karigane, K. Shiroshita, Y. Sorimachi, S. Fujita, T. Morikawa, S. Koide, M. Oshima, A. Nishiyama, K. Murakami, H. Miho, S. Tamaki, , K. Takubo

This study identifies PFKFB3 as a key regulator of glycolytic metabolism in HSCs under stress, showing its context-dependent activation promotes ATP production and hematopoiesis.

bioRxiv · Mar 16, 2023Cell Biology

The difference in FRET efficiency fluctuation at each end of the actin filament

T. Mitani, R. Mashiko, M. Nezasa, I. Nishikata, K. Kamimura, H. Honda, I. Fujiwara

The paper measures FRET efficiency fluctuations along actin filaments to reveal differences in local flexibility and orientation near each end.

bioRxiv · Jul 15, 2022 · PreprintBiophysics

RAID: Regression Analysis based Inductive DNA microarray for Precise Read-Across

Y. Amano, M. Yamane, H. Honda

RAID predicts in vivo gene expression from chemical structure or in vitro data, showing effectiveness in hepatotoxicity assessment.

bioRxiv · Feb 15, 2022Pharmacology & Toxicology

Regulation of ammonium acquisition and use in Oryza longistaminata ramets under nitrogen source heterogeneity

M. Kawai, R. Tabata, M. Ohashi, H. Honda, T. Kamiya, M. Kojima, Y. Takebayashi, S. Oishi, S. Okamoto, T. Hachiya, H. Sakakibara

Oryza longistaminata regulates ammonium acquisition and use in response to spatial nitrogen heterogeneity through inter-ramet communication.

bioRxiv · Aug 24, 2021Plant Biology

Quantitative Analysis of Plasmodesmata Permeability using Cultured Tobacco BY-2 Cells Entrapped in Microfluidic Chips

K. Shimizu, M. Kikkawa, R. Tabata, D. Kurihara, K.-i. Kurotani, H. Honda, M. Notaguchi

This paper develops a microfluidic device to study plasmodesmata permeability in cultured tobacco cells by observing real-time protein transport.

bioRxiv · Feb 19, 2021 · PreprintPlant Biology

Compartmentalized three-dimensional human neuromuscular tissue models fabricated on a well-plate-format microdevice

K. Yamamoto, N. Yamaoka, Y. Imaizumi, T. Nagashima, T. Furutani, T. Ito, Y. Okada, H. Honda, K. Shimizu

This study develops a microdevice for compartmentalized coculturing of motor neurons and skeletal muscle tissues to form functional neuromuscular junctions and test drug responses.

bioRxiv · Jan 7, 2021Bioengineering

Infrared absorptions as indicators for Pseudomonas aeruginosa and Acinetobacter baumannii

M. Yamamoto, S. Arata, K. Fukuchi, H. Honda, H. Kobayashi, M. Inagaki

This study uses infrared absorptions of volatile metabolites to distinguish Pseudomonas aeruginosa and Acinetobacter baumannii from other bacteria and room air.

bioRxiv · Mar 25, 2020 · PreprintMicrobiology