Author

J. D. Berry

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Biophysics· 1 Microbiology· 1 Pharmacology & Toxicology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:host-pathogen & immune response· 3 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Assay:CRISPR screen· 1 Research Focus:database / resource· 1

Frequent Co-Authors

F. G. Blankenberg· 2 shared J. Bondy-Denomy· 2 shared R. McBride· 2 shared T. Dharmaraj· 2 shared A. Echterhof· 1 shared A. Frymoyer· 1 shared A. Hargil· 1 shared A. Oromi-Bosch· 1 shared

Activity by Year

2018-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersPharmacology & Toxicology

F. G. Blankenberg

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

The contribution of neutrophils to bacteriophage clearance and pharmacokinetics in vivo

A. Echterhof, T. Dharmaraj, R. McBride, J. D. Berry, M. Hopkins, H. Selvakumar, K.-Y. Lin, L. Chia, C.-C. Shen, W. Lioa, P. Lee, T. Yeh, G. Suh, F. G. Blankenberg, A. Frymoyer, P. Bollyky

This study examines how neutrophils affect bacteriophage clearance and pharmacokinetics in mice, finding minimal impact from neutrophils but significant inactivation of phages over time.

JCI Insight · Oct 22, 2024Peer-reviewedPharmacology & Toxicology

Rapid assessment of changes in phage bioactivity using dynamic light scattering

T. Dharmaraj, M. J. Kratochvil, J. D. Pourtois, Q. Chen, M. Hajfathalian, A. Hargil, Y.-H. Lin, Z. R. Evans, A. Oromi-Bosch, J. D. Berry, R. McBride, N. L. Haddock, D. R. Holman, J. D. Van Belleghem, T. H. Chang, , P. L. Bollyky

This paper uses Dynamic Light Scattering to assess phage bioactivity changes over time and optimize storage conditions for clinical phage applications.

bioRxiv · Jul 2, 2023Biophysics

Temperature-responsive competitive inhibition of CRISPR-Cas9

F. Jiang, J.-J. Liu, B. A. Osuna, M. Xu, J. D. Berry, B. J. Rauch, E. Nogales, J. Bondy-Denomy, J. A. Doudna

This study shows AcrIIA2 and AcrIIA2b inhibit Cas9 DNA binding through structural occlusion, with temperature-dependent effects due to structural and environmental differences.

bioRxiv · Sep 3, 2018Biochemistry

A nucleus-like compartment shields bacteriophage DNA from CRISPR-Cas and restriction nucleases

S. D. Mendoza, J. D. Berry, E. S. Nieweglowska, L. M. Leon, D. Agard, J. Bondy-Denomy

This study identifies a nucleus-like compartment in a jumbo phage that protects its DNA from CRISPR-Cas and restriction nucleases, but leaves its mRNA vulnerable to Cas13a.

bioRxiv · Jul 17, 2018Microbiology