Author
Dan Joseph Stein
South African Medical Research CouncilORCID 0000-0001-7218-7810Unclaimed ORCID profile · follow to get notified of new preprints
Additional preprints under this name without ORCID
Biology Disciplines
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2017-2026 · peak 11/yrCo-Author Collaboration Network
10 top collaborators · 35 mutual co-author links68 papers
Recent·Most cited
- Genetic & Genomic MedicinemedRxivPreprintDOI 10.64898/2026.09.30.26364416
- NeuroscienceBiological PsychiatryPeer-reviewed
Inhibitory control and error processing in Obsessive-Compulsive Disorder: A mega-analysis of task-based fMRI data by the ENIGMA-OCD consortium
Nadža Džinalija, Odile A. van den Heuvel, Helen Blair Simpson…·Ilya Milos Veer
This study analyzes fMRI data from OCD patients and controls to identify age-specific differences in brain activation during inhibitory control and error processing.
- NeurosciencebioRxivPreprint✦ In-depth digest
Epigenetic and brain age across development: Performance and associations in the MIND consortium
Marlene Staginnus, Vilte Baltramonaityte, Isabel K. Schuurmans…·Esther Walton
Across 15 cohorts (birth to 24 years), 20 epigenetic clocks and eight brain age models predicted chronological age modestly, stabilizing by middle childhood; their age residuals were weakly associated.
1 citation - ImmunologyCytokinePeer-reviewed
Maternal and early-life longitudinal cytokine profiles in a South African birth cohort: the impact of HIV
Tusekile Sarah Kangwa, Catherine J. Wedderburn, Jenna F. Annandale…·Petrus J.W. Naudé
This study examines cytokine profiles in HIV-exposed and unexposed children and their mothers, finding persistent immune alterations in HEU children linked to maternal HIV.
DOI 10.1016/j.cyto.2026.157182 - NeurosciencebioRxivPreprint
Mapping Higher-Order Topology in OCD Brain Networks with Hodge Laplacian
Hanyang Ruan, Moo K Chung, Willem B. Bruin…·Kathrin Koch
This paper introduces a Hodge-Laplacian framework to analyze higher-order topology in OCD brain networks, identifying loop-level abnormalities not detectable by conventional functional connectivity analysis.
- NeuroscienceBiological PsychiatryPeer-reviewed
Structural Brain Network Alterations in Relation to Treatment and Illness Severity in Bipolar Disorder
Leila Nabulsi, Melody J.Y. Kang, Neda Jahanshad…·ENIGMA Bipolar Disorder Working Group
This study analyzes structural brain network changes in bipolar disorder, finding widespread connectivity disruptions linked to illness severity and medication use.
- NeurosciencebioRxivPreprint
Persistent neuroimmune alterations in children who are HIV-exposed but uninfected at age 6-7 years: Associations with language development in a South African birth cohort
Cesc Bertran-Cobo, Frances C. Robertson, Simone R. Williams…·Catherine J. Wedderburn
This study examines neuroimmune changes in HIV-exposed uninfected children and links them to language development using a South African cohort.
- GenomicsbioRxivPreprint
Identification of Dynamic Genetic Influences on DNA Methylation from Birth to Adulthood
Yueying Li, James R Staley, Anna Großbach…·Josine L. Min
The paper identifies age-dependent methylation quantitative trait loci (longitudinal mQTLs) across the lifespan using blood DNAm data from two cohorts, finding consistent genotype-by-age effects and associations with multiple phenotypes.
1 citation - NeuroscienceBiological PsychiatryPeer-reviewed
Childhood Maltreatment and Deviations from Normative Brain Structure: Results from 3,711 Individuals from the ENIGMA MDD and ENIGMA PTSD
Haley R Wang, Zhen-Qi Liu, Elena Pozzi…·Sigal Zilcha‐Mano
The paper examines how childhood maltreatment affects brain structure in 3,711 individuals with MDD and PTSD, finding age- and sex-specific brain morphometric differences.
- Genetic & Genomic MedicineNature GeneticsPeer-reviewed
Genome-wide association study of major anxiety disorders in 122,341 European-ancestry cases identifies 58 loci and highlights GABAergic signaling
Nora I. Strom, Brad Verhulst, Silviu‐Alin Bacanu…·Ted Reichborn‐Kjennerud
This paper identifies 58 genome-wide significant loci for major anxiety disorders using a large meta-analysis and highlights GABAergic signaling as a potential mechanism.
31 citationstop 1% - NeuroscienceImaging NeurosciencePeer-reviewed
Processing strategies for improving cortical thickness correspondence between low-field and high-field MRI in young people
Sunah Choi, Julia Shaw, Rebecca E. Cooper…·Maria Jalbrzikowski
This study evaluates low-field MRI processing strategies to improve cortical thickness correspondence with high-field MRI in young people, finding that recon-all-clinical on multi-orientation T2w images provides the best results.
- Genetic & Genomic MedicinemedRxivPreprint
Shared genetic architecture of brain age gap across 30 cohorts worldwide
Vilte Baltramonaityte, Philippe Jawinski, Marlene Staginnus…·Laura K. M. Han
This study identifies a shared genetic factor underlying brain age gaps across 30 cohorts, finding 19 SNPs and associations with health traits.
DOI 10.64898/2025.12.23.25342890 - NeuroscienceWellcome Open ResearchPeer-reviewed
Maternal and child immune profiles are associated with neurometabolite measures of early-life neuroinflammation in children who are HIV-exposed and uninfected: a South African birth cohort
Cesc Bertran-Cobo, Frances C. Robertson, Tusekile Sarah Kangwa…·Petrus J.W. Naudé
The paper examines associations between maternal and child immune profiles and neurometabolite measures of neuroinflammation in HIV-exposed uninfected and HIV-unexposed children.
DOI 10.12688/wellcomeopenres.24911.1 - Genetic & Genomic MedicineEuropean NeuropsychopharmacologyPeer-reviewed
Cell type-specific methylome-wide association studies of childhood ADHD symptoms
Mandy Meijer, Marieke Klein, Doretta Caramaschi…·Edwin J. C. G. van den Oord
This study identifies cell type-specific DNA methylation associations with childhood ADHD symptoms using deconvolution and sequencing-based methylation data from peripheral and cord blood.
3 citations - NeuroscienceNeuroImagePeer-reviewed
Image-Based Meta- and Mega-Analysis (IBMMA): A Unified Framework for Large-Scale, Multi-Site, Neuroimaging Data Analysis
Nick Steele, Ashley A. Huggins, Rajendra A. Morey…·Delin Sun
IBMMA improves neuroimaging analysis by handling missing data and large datasets, revealing new brain region findings overlooked by traditional methods.
6 citations - NeuroscienceLecture notes in computer sciencePeer-reviewed
A Scalable Toolkit for Modeling 3D Surface-based Brain Geometry
Yanghee Im, Leila Nabulsi, Melody J.Y. Kang…·for the ENIGMA Bipolar Disorder Working Group
The paper introduces a scalable toolkit for 3D surface-based brain analysis, demonstrating its utility in mapping subcortical shape variations across 21 international samples.
DOI 10.1007/978-3-032-06774-6_18 - NeurosciencebioRxivPreprint
Executive control in Obsessive-Compulsive Disorder: A worldwide mega-analysis of task-based functional neuroimaging data of the ENIGMA-OCD consortium
Nadža Džinalija, Ilya Milos Veer, Helen Blair Simpson…·Chris Vriend
This study analyzes fMRI data from OCD patients and controls to identify neural activation patterns during executive control tasks, finding reduced activation in frontoparietal regions and increased default mode network activity in OCD.
- GenomicsbioRxivPreprint
Genome-wide analysis of social behaviour in context: a meta-regression approach across social domains, reporters and developmental stages
Lucía de Hoyos, Fenja Schlag, Sanjeevan Jahagirdar…·Beaté St Pourcain
This study uses genome-wide meta-regression to analyze social behavior across different contexts, ages, and reporters, identifying six genetic loci and showing modest heritability.
DOI 10.1101/2025.08.16.667148 - NeuroscienceBrain Imaging and BehaviorPeer-reviewed
Subcortical volumes, frontal cortical thickness, and pro-inflammatory cytokines in schizophrenia versus methamphetamine-induced psychosis
Lauren Blake, Kimberley Clare Williams, Anne Uhlmann…·Petrus J.W. Naudé
This study compares subcortical volumes, frontal cortical thickness, and cytokine levels between schizophrenia, methamphetamine-induced psychosis, and controls, finding some structural similarities and differences.
- NeurosciencebioRxivPreprint
Genetic-Dependent Brain Signatures of Resilience: Interactions among Childhood Abuse, Genetic Risks and Brain Function
Lu Han, Edmund T. Rolls, Hanjia Liu…·Qiang Luo
The paper identifies a genetic-dependent brain signature of resilience linked to childhood abuse and depression risk in girls, showing its predictive value for emotional disorders in adolescence and early adulthood.
1 citation - GenomicsbioRxivPreprint
A blended genome and exome sequencing method captures genetic variation in an unbiased, high-quality, and cost-effective manner
Toni A. Boltz, Benjamin B. Chu, Calwing Liao…·Alicia R. Martin
The paper introduces BGE, a sequencing method that combines low-pass whole genome and deep whole exome data, showing high accuracy and cost-effectiveness for genetic variant discovery.
12 citations - Genetic & Genomic MedicineScientific ReportsPeer-reviewed
Genomic Insights into the Shared and Distinct Genetic Architecture of Cognitive Function and Schizophrenia
Olivia Wootton, Alexey A. Shadrin, Thomas Doug Bjella…·Shareefa Dalvie
This study identifies shared and distinct genetic factors between cognitive traits and schizophrenia using genomic structural equation modelling and GWAS data.
9 citations - Genetic & Genomic MedicinemedRxivPreprint
Epigenetic age deviation and mental health in childhood and adolescence: A systematic review and meta-analysis
L.B. Moyakhe, Shareefa Dalvie, Tsaone Chalumbila…·Nastassja Koen
This review examines the link between epigenetic age deviation and mental health in children, finding mixed results with some studies showing associations but no consistent meta-analysis result.
1 citation - GenomicsbioRxivPreprint
Blended Genome Exome (BGE) as a Cost Efficient Alternative to Deep Whole Genomes or Arrays
Matthew T. DeFelice, Jonna Grimsby, Daniel P. Howrigan…·Benjamin M. Neale
The paper introduces a cost-efficient sequencing method called Blended Genome Exome (BGE) that combines low-coverage whole genome and high-coverage exome data, achieving >99% concordance with 30x WGS for variant imputation and rare coding variant calling.
- Genetic & Genomic MedicinemedRxivPreprint
Epigenetic timing effects on child developmental outcomes: A longitudinal meta-regression of findings from the Pregnancy And Childhood Epigenetics Consortium
Alexander Neumann, Sara Sammallahti, Marta Cosín‐Tomás…·Charlotte A. M. Cecil
This study uses longitudinal meta-regression to examine how DNA methylation effects on child health outcomes vary by timing, finding larger effects in childhood but noisier associations and time-specific signals.
2 citations - NeuroscienceEpilepsiaPeer-reviewed
Patterns of subregional cerebellar atrophy across epilepsy syndromes: An ENIGMA-Epilepsy study
Rebecca Kerestes, Andrew Perry, Lucy E. Vivash…·Ian H. Harding
This study identifies subregional cerebellar atrophy patterns in epilepsy syndromes using MRI data from 1,602 patients and 1,022 controls, finding significant volume loss in posterior lobe regions.
- NeuroscienceMolecular PsychiatryPeer-reviewed
Connectome architecture shapes large-scale cortical alterations in schizophrenia: a worldwide ENIGMA study
Foivos Georgiadis, Sara Larivière, David C. Glahn…·Matthias Kirschner
This study investigates how structural brain alterations in schizophrenia relate to network architecture, finding hub susceptibility and shared epicenters across disease stages and disorders.
- NeurosciencebioRxivPreprint
Specific amygdala and hippocampal subfield volumes in social anxiety disorder and their relation to clinical characteristics; an international mega-analysis
Ziphozihle Ntwatwa, Jule M. Spreckelmeyer, Janna Marie Bas‐Hoogendam…·Nynke A. Groenewold
This study identifies specific amygdala and hippocampal subfield volume differences in social anxiety disorder compared to healthy controls, with associations to comorbid conditions.
1 citation - Genetic & Genomic MedicinemedRxivPreprint
Regional Genetic Architecture of the Corpus Callosum and its Overlap with Psychiatric and Substance Use Phenotypes
Megan L. Campbell, Alexey A. Shadrin, Dennis van der Meer…·Jaroslav Rokicki
The paper investigates the genetic architecture of the corpus callosum and its overlap with psychiatric and substance use phenotypes using GWAS summary statistics and causal mixture models.
2 citations - NeurosciencebioRxivPreprint
Estimating multimodal brain variability in schizophrenia spectrum disorders: A worldwide ENIGMA study
Wolfgang Omlor, Finn Rabe, Simon Fuchs…·Philipp Homan
This study examines structural brain heterogeneity in schizophrenia using multimodal MRI data from the ENIGMA dataset, finding higher frontotemporal heterogeneity and left parahippocampal homogeneity in patients.
2 citations