A Novel Open-Source CellProfiler Pipeline for Automated, User-Friendly Hierarchical and K-Means Clustering of Microglial Morphology
Antonia Landwehr, Cody Cools-Lartigue, Victor Hadera, Bianca Caroline Bobotis, Mohammadparsa Khakpour, Felipe Villela Gomes, Marie‐Ève Tremblay
The paper introduces a CellProfiler pipeline for automated clustering of microglial morphology using hierarchical and k-means methods, enabling user-friendly analysis of morphological subgroups.
bioRxiv · Sep 28, 2026 · PreprintCell Biology