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- experimental assay 7,682
- statistical model 3,563
- host-pathogen & immune response 2,551
- whole-genome sequencing 2,210
- proteomics 1,906
- cell type annotation 1,813
- gene regulatory network inference 1,589
- cell signaling & trafficking 1,100
- chromatin & epigenetic regulation 1,068
- metagenomics 1,053
- protein folding & dynamics 947
- variant calling 800
1,000+ papers
- MicrobiologyMicrobiological ResearchPeer-reviewed
Pseudomonas aeruginosa MucP contributes to RNA phage resistance by targeting phage lysis
Hee‐Won Bae, So-Yeon Kim, Shin-Yae Choi…·You‐Hee Cho
This study shows that MucP, a protease in Pseudomonas aeruginosa, reduces RNA phage PP7 lysis by targeting its lysis protein's transmembrane helix, providing resistance against phage-induced cell lysis.
DOI 10.1016/j.micres.2026.128804 - MicrobiologyArchives of MicrobiologyPeer-reviewed
Complete genome sequence and metabolic features of Vreelandella zhaodongensis BS253: A new isolate from hypersaline lakes from Brazilian Pantanal
William Lautert-Dutra, Amanda Pasinato Napp, Eduardo Alexandre Sivinski…·Clarissa Lovato Melo
This paper reports the complete genome sequence and metabolic features of a new extremophile isolate, Vreelandella zhaodongensis BS253, from a hypersaline lake, highlighting its potential for biotechnological applications in carbon capture and sustainable processes.
- BioengineeringiSciencePeer-reviewed
Extending digital biology: bacterial survival and morphological heterogeneity under antibiotic stress
Erik Maikranz, Andrey I. Aristov, Lena Le Quellec, Charles Naim Baroud
This study develops a workflow to generate morphological signatures of bacterial progeny under antibiotic stress, revealing distinct morphologies linked to survival and antibiotic type.
1 citation - MicrobiologymBioPeer-reviewed
Pressure-induced membrane tension mechanically opens the germinant receptor GerA ion channel to trigger bacterial spore germination
Lei Rao, Tianyu Zhang, Ziqi Gong…·Xiaojun Liao
This study shows that pressure-induced membrane tension opens the GerA ion channel in Bacillus subtilis spores, triggering germination through a stretch-to-open mechanism.
DOI 10.1128/mbio.02008-26 - Evolutionary BiologyPLoS BiologyPeer-reviewed
Parallel evolution of full-length genomes in a long-term evolution experiment with phage ΦX174
Eva Bons, Hélène Chabas, Hannelore MacDonald…·Roland R. Regoes
The paper tracks parallel evolution of full-length genomes in bacteriophage populations over 412 generations, showing non-neutral evolutionary dynamics and biases in phylodynamic analysis.
DOI 10.1371/journal.pbio.3004064 - BioengineeringCommunications MaterialsPeer-reviewed
3D-Printable and Cytocompatible Hydrogel from Acinetobacter baylyi ADP1 Extracellular Matrix
Shahla Radmehr, Petra Cassiani Ingoni, Ali Eftekhari…·Ville P. Santala
This paper develops a 3D-printable, cytocompatible hydrogel from Acinetobacter baylyi ADP1 extracellular matrix, demonstrating its versatility for biofabrication.
DOI 10.1038/s43246-026-01399-0 - MicrobiologyJournal of BacteriologyPeer-reviewed
Lipopolysaccharide Precursor Mutants Disrupt Unipolar Polysaccharide Adhesin Synthesis and Cell Surface Functions in Agrobacterium tumefaciens
Ian P. Reynolds, Isabel M. Westin, Caleb J. Wood, Clay Fuqua
This study identifies rfbA and rfbD genes critical for UPPGalN biosynthesis in Agrobacterium tumefaciens, revealing their role in cell surface functions, motility, and biofilm formation.
DOI 10.1128/jb.00297-26 - MicrobiologyFEMS Microbiology EcologyPeer-reviewed
Plasmid-plasmid interactions reshape extracellular vesicle cargo and gene transfer potential
Faina Tskhay, Haining Huang, Robin Starke…·Uli Klümper
This study shows that plasmid-plasmid interactions alter EV cargo composition and gene transfer potential in microbial communities.
DOI 10.1093/femsec/fiag123 - GeneticsPathogensPeer-reviewed
Transcriptome profiling reveals differential expression of virulence genes in Xylella fastidiosa under nutrient-rich and xylem-like conditions
Paulo Marques Pierry, Oseias Rodrigues Feitosa-Junior, Joaquim Martins…·Paulo A. Zaini
This study compares transcriptomes of Xylella fastidiosa under nutrient-rich and xylem-like conditions, identifying differential gene expression and regulatory divergence between strains.
DOI 10.3390/pathogens15111129 - MicrobiologyCurrent Research in Microbial SciencesPeer-reviewed
Functional insights into nucleoside diphosphate kinases encoded by two ndk paralogs in Waddlia chondrophila
Giti Ghazi-Soltani, Carole Kebbi‐Beghdadi, Simone E. Adams, Gilbert Greub
This study investigates the functional roles of two Ndk paralogs in W. chondrophila, suggesting distinct subcellular localizations and potential involvement in host interaction and nucleotide metabolism.
DOI 10.1016/j.crmicr.2026.100635 - Synthetic BiologyiSciencePeer-reviewed
ATP-Free Fatty Aldehyde Biosynthesis Enables an Autonomous Lux-Based Bioluminescence System
Subhan Hadi Kusuma, Takeharu Nagai
The paper develops an ATP-free bioluminescence system using DOX to convert fatty acids to fatty aldehydes, enhancing stability under metabolic stress.
DOI 10.1016/j.isci.2026.118029 - MicrobiologyApplied and Environmental MicrobiologyPeer-reviewed
A putative GtrB-like glycosyltransferase modulates cation-dependent BCP8-2 phage infection and cell surface structure in Bacillus cereus
Paul Tetteh Asare, Gaddapara Manasa, Yong Hwi Kwon…·Kwang-Pyo Kim
DOI 10.1128/aem.00824-26 - GenomicsGenome MedicinePeer-reviewed
Ciprofloxacin resistance in Klebsiella pneumoniae: phenotype prediction from genotype and global distribution of resistance determinants
Kara K. Tsang, Iana Amke, David M. Aanensen…·Carla Rodrigues
The paper develops a rules-based classifier to predict ciprofloxacin resistance in Klebsiella pneumoniae from genotype data and demonstrates its global distribution association with quinolone consumption.
- BioengineeringiSciencePeer-reviewed
Cellulase catalysis on cell surfaces using Caulobacter S-layer display
Beth Davenport, Tamar V. Av‐Shalom, Kateryna Ievdokymenko, Steven Hallam
This study uses Caulobacter S-layer display to express functional cellulases for lignocellulosic biomass conversion, demonstrating synergistic catalytic activities.
DOI 10.1016/j.isci.2026.118034 - MicrobiologyJournal of Clinical MicrobiologyPeer-reviewed
Whole genome-based Characterization of Virulence and Antimicrobial Resistance Determinants in Clinical Campylobacter jejuni Isolates from Minnesota, 2018-2021
Haejin Hwang-Hinz, Melanie Orth, Selina Jawahir…·Jisun S. Haan
This study uses whole-genome sequencing to analyze virulence and antimicrobial resistance in 2,783 Campylobacter jejuni isolates, finding high prevalence of resistance genes and strong correlation between genotypic and phenotypic resistance profiles.
DOI 10.1128/jcm.00514-26 - MicrobiologyFrontiers in MicrobiologyPeer-reviewed
Isolation and characterization of novel Klebsiella phages from Benin and their antibiofilm activities on multidrug resistant and hypervirulent strains of Klebsiella pneumoniae
Alidéhou Jerrold Agbankpe, Kafayath Fabiyi, Yaovi Mahuton Gildas Hounmanou…·Martha R. J. Clokie
The paper isolates and characterizes three novel Klebsiella phages from Benin that inhibit biofilm formation in multidrug-resistant and hypervirulent K. pneumoniae strains.
DOI 10.3389/fmicb.2026.1948708 - MicrobiologyMicrobial EcologyPeer-reviewed
CULTURE AND ISOLATION OF BACTERIA ASSOCIATED WITH MEDITERRANEAN CORALS
Rocio Mozo, Andrea Illa-Oviedo, Javier del Campo
The paper isolates and cultures bacteria from four Mediterranean corals, identifying 84 pure isolates, including novel species, to better understand their roles in the coral holobiont.
DOI 10.1007/s00248-026-02919-8 - Evolutionary BiologyPhysical Review LettersPeer-reviewed
Evolutionary Advantage of Diversity-Generating Retroelements in Switching Environments
Léo Régnier, Francesco Amoroso, Paul Rochette…·Rémi Monasson
The paper quantifies the fitness gain of DGR diversification compared to standard mutagenesis and identifies when DGR activation is evolutionarily favored.
DOI 10.1103/xqzp-wpsm - BiochemistryBiochemistryPeer-reviewed
Structure and dynamics of Burkholderia pseudomallei OXA-57, a distinctive low-efficiency class D β-lactamase with carbapenem-hydrolyzing activity
Éilís C. Bragginton, Charlotte K. Colenso, Michael Beer…·JAMES M. SPENCER
This paper characterizes OXA-57, a class D β-lactamase from Burkholderia pseudomallei, showing its activity against penicillins and cephalosporins, limited carbapenem hydrolysis, and structural insights into its mechanism.
- MicrobiologyApplied and Environmental MicrobiologyPeer-reviewed
Cobamide-based interactions between soil bacteria can be predicted based on monoculture growth
Zoila I. Alvarez-Aponte, Hazel I. Anagu, Kenny C. Mok…·Michiko E. Taga
The paper shows that cobamide concentrations predict microbial dominance in co-cultures, suggesting niche differentiation despite functional redundancy.
DOI 10.1128/aem.01300-26 - MicrobiologymBioPeer-reviewed
BR-bodies link RNA homeostasis to stress tolerance and intracellular fitness in Brucella
Kaveendya S. Mallikaarachchi, Rosemary Northcote, Thomas Kim…·Sean Crosson
This paper shows BR-bodies in Brucella regulate RNA stability and virulence by linking phase separation to stress resistance and intracellular fitness.
- BioinformaticsmSystemsPeer-reviewed
Comparative performance of reference-based metagenomic tools to identify species-level taxa among families of bacteria: benchmarking Mycobacteriaceae and Neisseriaceae
Luke B. Harrison, Juba O. Ahmed, Gnéré Coulibaly, Frédéric J. Veyrier
This study benchmarks reference-based metagenomic tools for species-level detection in closely related bacterial families, finding metapresence and sylph perform best.
DOI 10.1128/msystems.00444-26 - MicrobiologyMicrobiological ResearchPeer-reviewed
HelD is a Global Transcription Factor Enhancing Gene Expression in Rapidly Growing Mycobacteria
Viola Vaňková Hausnerová, Dilip Kumar, Silvia Neva…·Jarmila Hnilicová
The paper identifies HelD as a transcription factor that enhances gene expression in rapidly growing mycobacteria and reduces it in stationary phase, with implications for rifampicin resistance.
2 citations - Developmental BiologyScience AdvancesPeer-reviewed
Sensory receptor expansion and neural accommodation in butterfly color vision
Ke Gao, Julia A. Ainsworth, Antoine Donati…·Michael Perry
The paper investigates how butterflies expand their color vision by adding a second R7 photoreceptor and how the brain accommodates this change through developmental mechanisms.
DOI 10.1126/sciadv.aei7570 - BiochemistryBiochemistryPeer-reviewed
Ligand binding remodels the oligomeric state and active site of Klebsiella pneumoniae azoreductase
Reese Hitchings, Agnidipta Ghosh, Arthur Arcinas…·Ali J. Ryan
This study investigates the role of Klebsiella pneumoniae azoreductase in azo dye reduction, finding that its activity is lower than expected and suggesting non-enzymatic mechanisms may contribute to azo compound reduction in the gut.
DOI 10.1021/acs.biochem.6c00568 - MicrobiologyJournal of BacteriologyPeer-reviewed
Efficient septum formation is essential for chromosome segregation in Bacillus subtilis when SMC function is impaired
Nicole T Lai, Laura C. Lastra, Kehinde Oreoluwa Adebiyi…·Xindan Wang
This study identifies minJ and divIVA as essential for chromosome segregation in Bacillus subtilis when SMC function is impaired, highlighting the interdependence between chromosome segregation and cell division.
DOI 10.1128/jb.00345-26 - ImmunologyMolecular MicrobiologyPeer-reviewed
Rapid motility arrest of the Lyme disease spirochete, Borrelia burgdorferi, by vaccine-induced OspA antibodies
Ankita Bhattacharyya, Raymond Yau, Thomas Michael Bartlett, Nicholas John Mantis
The paper shows that OspA antibodies rapidly stop B. burgdorferi motility, using single-cell fluorescence microscopy.
DOI 10.1111/mmi.70122 - MicrobiologymBioPeer-reviewed
IscR-mediated morphological regulation confers virulence and stress resistance by reducing stress molecule uptake in Acinetobacter baumannii
Hoan Van Ngo, Nayoung Kim, Jumi Park, Jinki Yeom
This study identifies IscR-mediated morphological changes in A. baumannii that reduce stress molecule uptake, enhancing virulence and survival under oxidative stress and antibiotic treatment.
DOI 10.1128/mbio.01871-26 - MicrobiologyProceedings of the National Academy of SciencesPeer-reviewed
Two D-loop resolution systems enable natural genetic transformation in bacteria
Léo Hardy, Violette Morales, Clothilde J. Rousseau…·Patrice Polard
This study identifies two D-loop resolution systems in bacteria, YraN/ComM and CoiA/RadA, that work together to process the transformation D-loop during natural genetic transformation.
3 citations