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- statistical model 60,186
- experimental assay 55,591
- differential expression 33,862
- cell type annotation 31,969
- bulk RNA-seq 21,648
- proteomics 19,966
- gene regulatory network inference 17,145
- imaging 16,403
- host-pathogen & immune response 11,819
- drug response / drug discovery 11,338
- mouse 11,194
- benchmarking 10,328
1,000+ papers
- GenomicsScience AdvancesPeer-reviewed
Decoder-FFPE-seq enables sensitive, genome-wide spatial transcriptomics of archival tissues at single-cell resolution
Jiao Cao, Jun Zeng, Yiwei Meng…·Chaoyong James Yang
Decoder-FFPE-seq improves sensitivity and resolution for spatial transcriptomics in FFPE tissues, enabling analysis of rare genes and tumor microenvironments.
- NeurosciencebioRxivPreprint
Concussive Injury in Human Forebrain Organoids Alters Neurogenesis and Neuroimmune Signaling
Razieh Jaberi, Prince David Okoro, Christopher Taitano-Johnson…·Vijayalakshmi Santhakumar
This study uses human forebrain organoids to show that concussive injury affects neurogenesis and neuroimmune signaling differently depending on developmental stage.
DOI 10.64898/2026.10.29.762930 - NeurosciencebioRxivPreprint
Concurrent cognitive, behavioral and systemic physiological features mark preclinical Alzheimer's disease
Liat Tsoran, Yuval Rom, Ahlam Taha…·Tamir Ben‐Hur
The paper identifies subtle cognitive, behavioral, and physiological features in preclinical Alzheimer's disease using a risk factor-controlled cohort and an AI classifier.
DOI 10.64898/2026.10.26.761827 - NeuroscienceCommunications BiologyPeer-reviewed
Assessing whole-cortex excitability from electromagnetic brain signals
Giovanni Pellegrino, Gian Marco Duma, Anna‐Lisa Schuler…·Javier Rasero
This study evaluates ten excitability metrics from MEG data to show cortical excitability is multidimensional with distinct spatial and functional patterns.
- Cell BiologybioRxivPreprint
KIF1A-driven entry of degradative lysosomes into the axon is developmentally regulated by the microtubule environment at the axon initial segment
Nireekshit Addanki Tirumala, Surbhi Verma, Juan S. Bonifacino
This study shows that KIF1A-mediated lysosomal transport into axons is regulated by the axon initial segment microtubule environment, and its disruption leads to axonal degeneration.
- BiochemistryScience AdvancesPeer-reviewed
PDS5A and TOP2B cooperate for chromatin recruitment via CTCF
Edgar González-Buendía, Havva Ortabozkoyun, Danny Reinberg
This study identifies a functional interaction between PDS5A and TOP2B at CTCF-bound chromatin sites, showing their cooperative recruitment and impact on gene expression and chromatin structure in gliomas.
DOI 10.1126/sciadv.aeg2830 - Cell BiologybioRxivPreprint
Functional Mammary Gland Organoids From Human Induced Pluripotent Stem Cells
Roshni Nair, Maarten Ganne, Larissa Mourão…·Bob van de Water
This study develops a method to generate functional mammary gland organoids from human induced pluripotent stem cells, showing they can form layered epithelium and respond to hormonal signals.
- GenomicsbioRxivPreprint
A 4,000-year genomic history of Bantu speakers from the Congo rainforest
Oğuzhan Parasayan, Maguelonne Roux, Fanny Mendisco…·Étienne Patin
This study uses genomic data from ancient and present-day individuals to trace the 4,000-year demographic history of Bantu speakers in the Congo rainforest, revealing early dispersals and a population crisis.
DOI 10.64898/2026.10.27.762084 - NeurosciencebioRxivPreprint
Item-specific clustering of high gamma-band activity on theta phase during speech categorization
Sanne ten Oever, Joel Reithler, Mario E. Archila-Meléndez…·Judith Carolien Peters
The paper investigates phase-dependent perceptual biases during speech categorization and finds item-specific theta-gamma phase-amplitude coupling linked to neural and perceptual responses.
DOI 10.64898/2026.10.29.762424 - GenomicsbioRxivPreprint
Somatic variant detection using an individual-specific pangenome reference: a case study of a pediatric acute myeloid leukemia patient
Elizaveta Kulaeva, Eline J.M. Bertrums, Markus J. van Roosmalen…·Andrea Guarracino
This study evaluates the impact of an individual-specific pangenome on somatic variant calling in a pediatric AML patient, finding reduced false positives and altered phylogenetic branching.
DOI 10.64898/2026.10.27.756267 - ImmunologybioRxivPreprint
Intrinsic immune receptor triggering mechanism informs rational chimeric receptor design
Songfang Wu, Hui Chen, Qi Wang…·Jizhong Lou
The paper identifies CD3ε as a primary trigger subunit in TCR activation through phase separation with Lck, leading to the design of TRIG molecules that activate T and NK cells via endogenous receptor signaling.
DOI 10.64898/2026.10.24.761481 - Pharmacology & ToxicologybioRxivPreprint
Toxicity Prediction Tools Do Not Generalize to Novel Chemistry
Martin Weiss, Circe Hsu, Cailum M. K. Stienstra…·Antonio H. O. Fonseca
This study evaluates toxicity prediction tools on approved drugs, finding no method outperforms simple fingerprints, and highlighting the need for inputs beyond molecular structure.
DOI 10.64898/2026.10.26.761698 - Cell BiologybioRxivPreprint
GolgiFold: A Structural Predictome of Human Golgi Protein Complexes
Miguel A. Gonzalez‐Lozano, Kelsey L. Hickey, Ernst W. Schmid…·J. Wade Harper
The paper develops GolgiFold, a structure-based PPI map of human Golgi proteins, identifying over 1,800 interactions and confirming new protein contacts through experimental validation.
DOI 10.64898/2026.10.29.758816 - Animal Behavior & CognitionbioRxivPreprint
Torsion in motion: the visual system as a three-axis gimbal
Andrés Hugo Méndez, Jorge Otero‐Millan, Cristina de la Malla, Joan López‐Moliner
This study estimates eye torsion during walking using head-mounted technology and shows its role in altering retinal flow for self-motion parameter extraction.
- NeuroscienceeLifePeer-reviewed
Distinct gradients of cortical architecture capture visual representations and behavior across the lifespan
Xiayu S. Chen, Xingyu Liu, Patricia Maria Hoyos…·Jesse Gomez
The paper shows two architectural gradients in human visual cortex that correlate with structural, functional, and behavioral traits across the lifespan.
- Pharmacology & ToxicologybioRxivPreprint
Electrically Enhanced Intraperitoneal Drug Delivery Resolved by Fluorescence Lifetime Imaging Microscopy
Nidda Saeed, Irina A. Okkelman, Sergey M. Borisov…·Wim P Ceelen
This study evaluates electrically enhanced intraperitoneal drug delivery using nanoparticles and fluorescence lifetime imaging microscopy to track drug penetration and intracellular release.
- BioengineeringbioRxivPreprint
Perceptual sensitivity supports online control, while perceptual errors drive motor memory formation during locomotor adaptation
Marcela Gonzalez-Rubio, Amber R Costello, Pablo A. Iturralde, Gelsy Torres‐Oviedo
This study investigates how perceptual sensitivity and errors contribute to locomotor adaptation, finding that sensitivity drives initial motor corrections while errors predict motor aftereffects.
DOI 10.64898/2026.08.01.742204 - Evolutionary BiologyProceedings of the National Academy of SciencesPeer-reviewed
Deep Mutational Scanning of the GPCR Rhodopsin Reveals Pleiotropic Mutational Effects and Their Roles in Modulating Light Sensitivity
Steven K. Chen, Jing Liu, Belinda S. W. Chang
The paper uses deep mutational scanning to study pleiotropic effects in rhodopsin, revealing how mutations impact multiple molecular phenotypes and shape light sensitivity.
DOI 10.1073/pnas.2624087123 - NeuroscienceScientific ReportsPeer-reviewed
Cognitive Control in Pediatric Cancer Survivors: A task-fMRI study
Siddharth Nayak, Shounak Nandi, Faye McKenna…·Timothy Q. Duong
This study uses fMRI to compare brain activation during a cognitive task between pediatric cancer survivors exposed to chemotherapy and healthy controls, finding altered neural activation and cognitive control deficits in the chemo-exposed group.
- MicrobiologybioRxivPreprint
Chikungunya virus live-cell reporter systems reveal cell-type-dependent antiviral responses to ribavirin
Samuel J. Dobson, Molly G. A. Brereton, Lai Wei…·Andrew Tuplin
This study develops live-cell CHIKV reporter systems to analyze cell-type-dependent antiviral responses to ribavirin, revealing differences in antiviral efficacy across cell models.
DOI 10.64898/2026.10.27.762381 - BioinformaticsbioRxivPreprint
A comprehensive map of the sequence basis of transcription initiation in humans
Adam Youlin He, Claire Tian, Anshul Bharat Kundaje
The paper develops deep learning models to predict transcription initiation patterns from DNA sequences across human tissues and cancers.
DOI 10.64898/2026.10.29.762743 - Cell BiologybioRxivPreprint
iPSC modeling of pulmonary arterial hypertension to uncover pathomechanisms and unrecognized modes of action of sotatercept
Aileen Schmidt, Laurien Czichon, Leonie Malhofer…·Ruth Olmer
This study uses patient-derived iSMCs to uncover new mechanisms of PAH and sotatercept's effects beyond its known anti-proliferative actions.
- BioinformaticsbioRxivPreprint
Serum nutritional-metabolic recovery during tuberculosis treatment across BMI-defined undernutrition strata: A longitudinal proteomic reanalysis
Reuben S. Maghembe, Vesla I. Kullaya, Ritah Francis Mutagonda…·Scott Kirkland Heysell
This study reanalyzes longitudinal serum proteomics data from tuberculosis patients to assess how nutritional-metabolic recovery during treatment varies by baseline BMI, finding no significant BMI-dependent trajectories but an overall increase in a 36-protein summary axis.
DOI 10.64898/2026.10.26.761896 - Cell BiologybioRxivPreprint
Knockdown of the long non-coding RNA DNAAF3-AS1 activates the p53 pathway and remodels the H3K36me3 landscape
Anna Budkina, Anatoliy V. Zubritskiy, Daria Marakulina…·Yulia A. Medvedeva
This study shows that knocking down DNAAF3-AS1 reduces gene-body H3K36me3, activates the p53 pathway, and alters promoter usage in apoptosis-related genes.
- BioengineeringbioRxivPreprint
Mesoscale Soft Robotics for Mechanically Perturbing and Functionally Monitoring Responses in Human Organoids
Woo‐Youl Maeng, Zengyao Lv, Yasaman Samei…·John A. Rogers
This paper introduces a mesoscale soft robotic interface to apply mechanical forces to human organoids and monitor their physiological responses, revealing distinct mechanical and electrophysiological behaviors in cortical and cardiac organoids.
DOI 10.64898/2026.10.28.762586 - Cancer BiologyJournal of Evolutionary BiologyPeer-reviewed
Assessing the Operational Feasibility of Evolutionary Therapy in Metastatic Non-Small Cell Lung Cancer
Arina Soboleva, Kailas Shankar Honasoge, Eva Molnárová…·Kateřina Staňková
This study evaluates the clinical feasibility of evolutionary therapy for NSCLC by simulating its performance under real-world constraints like measurement error and appointment delays.
1 citation - MicrobiologybioRxivPreprint
ARG-PASS v2.0 expands global resistome surveillance to reveal previously unrecognized antibiotic resistance genes reaching the human gut
Lachlan Bartrop, Frédéric Grenier, Joseph P. Bielawski…·Louis‐Patrick Haraoui
ARG-PASS v2.0 identifies previously unrecognized antibiotic resistance genes in environmental samples and links them to human gut microbiomes through dietary exposure.
DOI 10.64898/2026.10.21.760772