Author
Centre National de la Recherche Scientifique
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
8 papers
Recent·Most cited
Élodie Caudal, Victor Loegler, Fabien Dutreux, Nikolaos Vakirlis, Élie Teyssonnière, Claudia Caradec, Anne Friedrich, Jing Hou, Joseph Schacherer
The paper analyzes the pan-transcriptome of yeast isolates to show that accessory genes significantly contribute to gene expression variation across populations.
Nature Genetics · May 22, 2024Peer-reviewedGenomics
Abhishek Dutta, Fabien Dutreux, Marion Garin, Claudia Caradec, Anne Friedrich, Gauthier Brach, Pia Thiele, Bertrand Llorente, Joseph Schacherer
The paper analyzes meiotic recombination landscapes across five yeast species, finding species-specific differences in recombination rates, crossover interference, and hotspot conservation.
bioRxiv · Feb 13, 2024 · PreprintGenomics
Samuel O’Donnell, Jia‐Xing Yue, Omar Abou Saada, Nicolas Agier, Claudia Caradec, Thomas Cokelaer, Matteo De Chiara, Stéphane Delmas, Fabien Dutreux, Téo Fournier, Anne Friedrich, Étienne Kornobis, Jing Li, Zepu Miao, Lorenzo Tattini, , Gilles Fischer
This paper presents 142 high-quality yeast genomes to improve pangenome understanding, identifying structural variants and complex genomic regions.
Nature Genetics · Jul 31, 2023Peer-reviewedGenomics
Anne Friedrich, Jean-Sébastien Gounot, Andreas Tsouris, Claudine Bleykasten-Grosshans, Kelle C. Freel, Claudia Caradec, Joseph Schacherer
This study compares genomic evolution between domesticated and wild Kluyveromyces lactis yeast populations, finding reduced diversity and gene introgression in domesticated strains.
Genome Biology and Evolution · Jan 11, 2023Peer-reviewedGenomics
Émilien Peltier, Sabrina Bibi‐Triki, Fabien Dutreux, Claudia Caradec, Anne Friedrich, Bertrand Llorente, Joseph Schacherer
The paper identifies QTL hotspots in Lachancea waltii for growth fitness and shows they are not conserved in a closely related species.
bioRxiv · Apr 7, 2021 · PreprintGenetics
Christian Brion, Claudia Caradec, David Pflieger, Anne Friedrich, Joseph Schacherer
The paper investigates the phenotypic impact of a large non-recombining introgressed region in Lachancea kluyveri yeast, identifying loci affecting growth and gene expression.
Molecular Biology and Evolution · Apr 23, 2020Peer-reviewedGenetics
Christian Brion, Sylvain Legrand, Jackson Peter, Claudia Caradec, David Pflieger, Jing Hou, Anne Friedrich, Bertrand Llorente, Joseph Schacherer
The paper examines meiotic recombination differences between Saccharomyces cerevisiae and Lachancea kluyveri, finding significant variations in recombination rates, crossover patterns, and hotspot conservation across evolutionary distances.
PLoS Genetics · Aug 1, 2017Peer-reviewedGenomics
Benjamin Istace, Anne Friedrich, Léo d'Agata, Sébastien Faye, Emilie Payen, Odette Beluche, Claudia Caradec, Sabrina Davidas, Corinne Cruaud, Gianni Liti, Arnaud Lemainque, Stefan Engelen, Patrick Wincker, Joseph Schacherer, Jean-Marc Aury
The paper evaluates nanopore-only genome assemblies of yeast isolates using MinION, showing improved contiguity and structural variant detection compared to Illumina-only assemblies.
bioRxiv · Jul 28, 2016Bioinformatics