Author

J. Carroll

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Cancer Biology· 4 Biochemistry· 1 Cell Biology· 1 Microbiology· 1 Physiology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 6 Organism:human· 6 Assay:bulk RNA-seq· 5 Research Focus:cell type annotation· 5 Organism:mouse· 3 Approach:statistical model· 3 Research Focus:cell signaling & trafficking· 2 Research Focus:differential expression· 2

Frequent Co-Authors

A. V. LEE· 2 shared G. Tseng· 2 shared J. Bormann· 2 shared M. E. Yates· 2 shared S. Oesterreich· 2 shared Y. Wu· 2 shared Z. Li· 2 shared A. Bahreini· 1 shared

Activity by Year

2018-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersCancer Biology

A. V. LEE

Mutual co-authors in cluster

Author profile →

8 papers

Recent·Most cited

Identification of conserved gene expression programs activated in multiple modes of torpor across vertebrate clades.

K. Weir, N. Vega, V. Busa, B. Sajdak, L. Kallestad, D. Merriman, K. Palczewski, J. Carroll, S. Blackshaw

This study identifies conserved gene expression programs in torpor across vertebrates using StrokeofGenus, revealing three transcriptomic states and conserved patterns despite evolutionary divergence.

bioRxiv · Nov 29, 2023 · PreprintPhysiology

TRIB1 modulates transcriptional programming in breast cancer cells to regulate cell proliferation

H. D. McMillan, E. K. Papachristou, J. Hazlett, S. Omarjee, J. Carroll, M. Black, P. D. Mace, A. Dunbier

This study shows TRIB1 promotes breast cancer cell proliferation by regulating MYC expression and cell cycle progression through interactions with β-catenin and ER-driven transcription.

bioRxiv · Jul 6, 2023 · PreprintCancer Biology

EstroGene database reveals diverse temporal, context-dependent and directional estrogen receptor regulomes in breast cancer

Z. Li, T. Li, M. E. Yates, Y. Wu, A. Ferber, L. Chen, D. D. Brown, J. Carroll, M. J. Sikora, G. Tseng, S. Oesterreich, A. V. LEE

The paper establishes the EstroGene database, which compiles 246 experiments from 136 datasets to analyze estrogen receptor regulomes in breast cancer, revealing diverse temporal, context-dependent, and directional responses.

bioRxiv · Jan 30, 2023 · PreprintCancer Biology

Hotspot ESR1 mutations are multimodal and contextual drivers of breast cancer metastasis

Z. Li, Y. Wu, M. E. Yates, N. Tasdemir, A. Bahreini, J. Chen, K. M. Levine, N. M. Priedigkeit, S. Ali, L. Buluwela, S. Arnesen, J. Gertz, J. K. Richer, B. Troness, D. El-Ashry, , S. Oesterreich

This study identifies ESR1 mutations as drivers of breast cancer metastasis by altering cell adhesion and migration through genomic and transcriptomic reprogramming.

bioRxiv · Feb 10, 2021 · PreprintCancer Biology

Changes in subcellular structures and states of Pumilio1 regulate the translation of target Mad2 and Cyclin B1 mRNAs

T. Kotani, N. Takei, Y. Takada, S. Kawamura, A. Saitoh, J. Bormann, W. S. Yuen, J. Carroll

The paper shows that changes in Pumilio1 structures and states regulate the translation of Mad2 and Cyclin B1 mRNAs in mouse oocytes through an aggregation-dissolution mechanism.

bioRxiv · Feb 25, 2020Cell Biology

The GATA3 X308_Splice breast cancer mutation is a hormone context-dependent oncogenic driver

N. Hruschka, M. Subijana, O. Grana-Castro, F. Del Cano-Ochoa, L. Pare Brunet, A. Sagrera, A. De Reynies, D. Andreu, J. Sutton, I. Chernukhin, S.-F. Chin, C. Caldas, A. Lluch, O. Burgues, B. Bermejo, , P. Martinelli

The paper investigates the context-dependent oncogenic effects of the GATA3 X308_Splice mutation in breast cancer, showing its differential impact based on hormonal status.

bioRxiv · Jun 8, 2019Cancer Biology

The Role of fosA in Challenges with Fosfomycin Susceptibility Testing of Multispecies Klebsiella pneumoniae Carbapenemase-Producing Clinical Isolates

Z. S. Elliott, K. E. Barry, H. L. Cox, N. Stoesser, J. Carroll, K. B. Vegesana, S. M. Kotay, A. E. Sheppard, A. M. Wailan, D. W. Crook, H. Parikh, A. J. Mathers

This study evaluates fosfomycin susceptibility testing in KPC-producing Klebsiella pneumoniae isolates and finds that fosA gene presence affects test accuracy, with sodium phosphonoformate improving results.

bioRxiv · Apr 18, 2019Microbiology

Covalent Aurora A regulation by the metabolic integrator coenzyme A

Y. Tsuchiya, D. Byrne, S. Burgess, J. Bormann, J. Bakovic, Y. Huang, A. Zhyvoloup, S. Peak-Chew, T. Tran, F. Bellany, A. Tabor, E. Chan, L. Guruprasad, O. Garifulin, V. Filonenko, , I. Gout

This study identifies a novel covalent inhibition mechanism of Aurora A kinase by coenzyme A, showing its regulation under oxidative stress and impact on meiotic spindle formation.

bioRxiv · Nov 14, 2018Biochemistry