Author

P. Pham

University of California, Riverside

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Biochemistry· 1 Biophysics· 1 Cancer Biology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Assay:bulk RNA-seq· 2 Approach:deep learning· 2 Research Focus:host-pathogen & immune response· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cancer & tumor microenvironment· 1

Frequent Co-Authors

R. Das· 2 shared R. Rangan· 2 shared A. Harmalkar· 1 shared A. J. Simpkin· 1 shared A. Siryaporn· 1 shared A. Wiegand· 1 shared B. M. Jones· 1 shared B. Taylor· 1 shared

Activity by Year

2020-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 7 mutual co-author links

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2 shared papersBiophysics

R. Das

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Author profile →

7 papers

Recent·Most cited

Astrocyte regulatory volume decrease is condition-dependent in intact brain tissue and requires the volume regulated anion channel

Sandhya Sriram, Chrissy D. Lopez, P. Pham, Devin K. Binder, Todd A. Fiacco

This study investigates the role of VRAC in astrocyte volume regulation in intact brain tissue, finding that RVD is condition-dependent and requires VRAC and intracellular taurine.

bioRxiv · Aug 21, 2026 · PreprintNeuroscience

Glioblastoma Mesenchymal Transition and Invasion are Dependent on a NF-κB/BRD2 Chromatin Complex

r. vadla, S. Miki, B. Taylor, D. Kawauchi, B. M. Jones, N. Nathwani, P. Pham, J. Tsang, D. A. Nathanson, F. B. Furnari

This study identifies the PTEN-NF-κB-BRD2 pathway as critical for glioblastoma mesenchymal transition and invasion, suggesting BET-BD2 inhibitors as a therapeutic strategy.

bioRxiv · Jul 3, 2023 · PreprintCancer Biology

The great divide: rhamnolipids mediate separation between P. aeruginosa and S. aureus

J.-L. Bru, S. J. Kasallis, R. Chang, Q. Zhuo, J. Nguyen, P. Pham, E. Warren, K. Whiteson, N. M. Hoyland-Kroghsbo, D. H. Limoli, A. Siryaporn

This study shows that rhamnolipids mediate physical separation between P. aeruginosa and S. aureus, enabling coexistence through surfactant flow deflection.

bioRxiv · Jun 23, 2023 · PreprintMicrobiology

Assessment of three-dimensional RNA structure prediction in CASP15

R. Das, R. C. Kretsch, A. J. Simpkin, T. Mulvaney, P. Pham, R. Rangan, F. Bu, R. M. Keegan, M. Topf, D. J. Rigden, Z. Miao, E. Westhof

This paper evaluates RNA 3D structure prediction methods in CASP15, finding that non-deep learning groups outperformed deep learning models, with challenges in fine details and model ranking.

bioRxiv · Apr 25, 2023Biophysics

RNA structure landscape of S. cerevisiae introns

R. Rangan, R. Huang, O. Hunter, P. Pham, M. Ares, R. Das

The paper characterizes RNA structures in S. cerevisiae introns using DMS probing and identifies new structural elements that influence intron retention.

bioRxiv · Jul 22, 2022 · PreprintBiochemistry

Colicin-mediated transport of DNA through the iron transporter FepA

R. Cohen-Khait, A. Harmalkar, P. Pham, M. N. Webby, N. G. Housden, E. Elliston, J. T. Hopper, S. Mohammed, C. V. Robinson, J. J. Gray, C. Kleanthous

This study shows colicin B uses the iron transporter FepA to transport DNA into E. coli, revealing a mechanism for cargo delivery through bacterial membranes.

bioRxiv · May 11, 2021Microbiology

Mechanistic Analysis of the Broad Antiretroviral Resistance Conferred by HIV-1 Envelope Glycoprotein Mutations

Y. Hikichi, R. Van Duyne, P. Pham, J. L. Groebner, A. Wiegand, J. W. Mellors, M. F. Kearney, E. O. Freed

This study shows that HIV-1 envelope glycoprotein mutations can confer broad antiretroviral resistance through cell-cell transmission and structural changes, independent of target-gene mutations.

bioRxiv · Aug 6, 2020Microbiology