Author

V. Tran

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4 Cell Biology· 2 Immunology· 2 Biochemistry· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 7 Organism:human· 6 Research Focus:cell type annotation· 3 Research Focus:host-pathogen & immune response· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Organism:bacteria (other)· 1 Organism:C. elegans· 1

Frequent Co-Authors

A. Benos· 1 shared A. D. Schmitt· 1 shared A. Grenell· 1 shared A. Hing· 1 shared A. J. Milligan· 1 shared A. M. Rozario· 1 shared A. Mechler· 1 shared A. Mehle· 1 shared

Activity by Year

2018-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 7 mutual co-author links

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1 shared paperBiochemistry

A. Benos

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Author profile →

10 papers

Recent·Most cited

MetaIBS: large-scale amplicon-based meta analysis of irritable bowel syndrome

S. Carcy, J. Ostner, V. Tran, M. P. Menden, C. L. Muller

MetaIBS performs a large-scale meta-analysis of 16S rRNA amplicon data from IBS patients and healthy controls, identifying consistent microbial taxa differences.

bioRxiv · Jan 22, 2024 · PreprintMicrobiology

Chromosome size-dependent polar ejection force impairs mammalian mitotic error correction

M. K. Chong, M. K. Rosas Salvans, V. Tran, S. Dumont

The paper shows that long chromosomes experience delayed error correction during mitosis due to increased polar ejection force, which can falsely stabilize incorrect attachments.

bioRxiv · Oct 16, 2023Cell Biology

Virally induced lipid droplets are a platform for innate immune signalling complexes

E. A. Monson, J. L. Laws, Z. Telikani, A. J. Milligan, A. M. Rozario, I. Amarasinghe, M. L. Smith, V. Tran, Q. Dinh, N. A. Williamson, A. Mechler, C. Johnson, M. J. Hofer, S. Nie, D. R. Whelan, K. J. Helbig

This study shows that virally induced lipid droplets host antiviral signaling proteins and undergo dynamic proteome and lipidome changes to support innate immune responses.

bioRxiv · Apr 20, 2023 · PreprintImmunology

Cellular Heterogeneity of Pluripotent Stem Cell Derived Cardiomyocyte Grafts is Mechanistically Linked to Treatable Arrhythmias

D. Selvakumar, Z. E. Clayton, A. Prowse, S. Dingwall, J. George, H. Shah, S. Chen, R. D. Hume, L. Tjahjadi, S. Igoor, R. J. P. Skelton, A. Hing, H. Paterson, S. L. Foster, L. Pearson, , J. J. H. Chong

This study identifies arrhythmogenic subpopulations in pluripotent stem cell-derived cardiomyocytes and shows that combination therapy and catheter ablation can reduce engraftment arrhythmias.

bioRxiv · Sep 15, 2022 · PreprintCell Biology

The cyclin Cln1 controls polyploid titan cell formation following a stress-induced G2 arrest in Cryptococcus

S. Altamirano, Z. Li, M. S. Fu, M. Ding, S. R. Fulton, J. M. Yoder, V. Tran, K. Nielsen

This study identifies Cln1 as a regulator of G2 arrest and titan cell formation in Cryptococcus neoformans under stress conditions.

bioRxiv · Aug 24, 2021Microbiology

The urea cycle is transcriptionally controlled by hypoxia-inducible factors

C. Singh, A. Benos, A. Grenell, V. Tran, D. Hanna, N. Kannekanti, B. Anand-Apte, H. Brunengraber, J. Sears

The paper shows that HIFs regulate urea cycle genes CPS1 and ARG1, leading to increased urea cycle activity in the liver under hypoxia.

bioRxiv · Jan 25, 2021 · PreprintBiochemistry

Spatial co-fragmentation pattern of cell-free DNA recapitulates in vivo chromatin organization and identifies tissues-of-origin

Y. Liu, T.-Y. Liu, D. E. Weinberg, B. W. White, C. J. De La Torre, C. L. Tan, A. D. Schmitt, S. Selvaraj, V. Tran, L. C. Laurent, L. Cabel, F.-C. Bidard, G. Putcha, I. S. Haque

The paper shows that fragment length patterns in cell-free DNA reflect in vivo chromatin organization and can identify tissues-of-origin.

bioRxiv · Oct 23, 2019 · PreprintGenomics

EPS8 facilitates uncoating of influenza A virus

G. P. Larson, V. Tran, S. Yu, Y. Cai, C. A. Higgins, D. M. Smith, S. F. Baker, S. R. Radoshitzky, J. H. Kuhn, A. Mehle

This study identifies EPS8 as a host factor that facilitates influenza A virus uncoating by delaying nuclear import of ribonucleoprotein complexes.

bioRxiv · Mar 28, 2019Microbiology

A human ex vivo dengue virus neutralization assay identifies priority antibodies and epitopes for vaccines and therapeutics.

T. Vu, H. Clapham, V. Huynh, L. Vo, D. Le, N. Vu, G. Nguyen, T. Huynh, K. Duong, V. Tran, H. Huynh, T. Huynh, T. Nguyen, N. Nguyen, T. Luong, , C. Simmons

This study develops an ex vivo dengue virus neutralization assay using mosquitoes to identify potent human monoclonal antibodies and their epitopes for vaccine and therapeutic development.

bioRxiv · Jan 10, 2019Immunology

Resilience to oxidative and nitrosative stress is mediated by the stressosome, RsbP and SigB in Bacillus subtilis.

V. Tran, K. Geraci, G. Midili, W. Satterwhite, R. Wright, C. Y. Bonilla

This study identifies the stressosome, RsbP, and SigB as mediators of resilience to oxidative and nitrosative stress in Bacillus subtilis through genetic and physiological analyses.

bioRxiv · Nov 2, 2018Microbiology