Author

Bingnan Li

Science for Life LaboratoryORCID 0000-0001-8143-4035Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:differential expression· 4 Approach:experimental assay· 4 Assay:bulk RNA-seq· 3 Research Focus:gene regulatory network inference· 3 Research Focus:cell type annotation· 2 Organism:Arabidopsis· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Vicent PelechanoiD· 4 shared Jingwen WangiD· 2 shared Lars Michael SteinmetziD· 2 shared Aino I. JärveliniD· 1 shared Alfredo CastellóiD· 1 shared Alisa AlekseenkoiD· 1 shared Bernd FischeriD· 1 shared Caroline E. Lenz· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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4 shared papersGenomics

Vicent PelechanoORCID

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4 papers

Recent·Most cited

Differential regulation of mRNA stability modulates transcriptional memory and facilitates environmental adaptation

Bingnan Li, Patrice Zeis, Yujie Zhang, Alisa Alekseenko, Eliška Fürst, Yerma Pareja Sanchez, Gen Lin, Manu M. Tekkedil, Ilaria Piazza, Lars Michael Steinmetz, Vicent Pelechano

The paper identifies mRNA stability regulation as a factor modulating transcriptional memory in yeast, showing it enhances gene expression remodelling in primed cells.

Nature Communications · Feb 17, 2023Peer-reviewedGenomics

Dissecting chronic myeloid leukaemia overlapping transcriptome with TIF-Seq2

Jingwen Wang, Bingnan Li, Sueli Marques, Lars Michael Steinmetz, Wei Wu, Vicent Pelechano

The paper introduces TIF-Seq2, a method to sequence RNA 5 and 3 ends at single-nucleotide resolution, improving transcriptome annotation and identifying overlapping transcripts in chronic myeloid leukaemia.

Nucleic Acids Research · Aug 7, 2020Peer-reviewedGenomics

Transcript isoform sequencing reveals widespread promoter-proximal transcriptional termination

Quentin Angelo Thomas, Ryan Ard, Jinghan Liu, Bingnan Li, Jingwen Wang, Vicent Pelechano, Sebastian Marquardt

The paper uses TIF-seq to identify TSS/PAS pairs in Arabidopsis, revealing widespread promoter-proximal transcriptional termination through sppRNAs.

Nature Communications · May 22, 2020Peer-reviewedGenomics

Understanding RNP remodelling uncovers RBPs functionally required for viral replication

Manuel García-Moreno, Marko Noerenberg, Shuai Ni, Aino I. Järvelin, Esther González-Almela, Caroline E. Lenz, Marcel Bach‐Pages, Victoria A. Cox, Rosario Avolio, Thomas Davis, Svenja Hester, Thibault J. M. Sohier, Bingnan Li, Miguel Ángel Sanz, Luis Carrasco, , Alfredo Castelló

The paper investigates how RNA-binding proteins (RBPs) change in response to viral infection and identifies RBPs crucial for viral replication.

bioRxiv · Jun 20, 2018 · PreprintMolecular Biology