Author

Caroline De Almeida

University of BaselORCID 0000-0002-7481-1506Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:Drosophila· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Research Focus:protein structure prediction· 2 Organism:Arabidopsis· 1 Approach:biophysical modeling· 1 Research Focus:cell signaling & trafficking· 1

Frequent Co-Authors

Maria HondeleiD· 2 shared Alberto TroleseiD· 1 shared Andrey A. MironoviD· 1 shared Andrzej DziembowskiiD· 1 shared Asen GarbelyanskiiD· 1 shared Christina PiermariaiD· 1 shared Claudia Isabelle Keller ValsecchiiD· 1 shared Daan OverwijniD· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersMolecular Biology

Maria HondeleORCID

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Author profile →

3 papers

Recent·Most cited

PAIP1 couples mRNA export to cytoplasmic mRNP remodeling and poly(A) homeostasis

Daan Overwijn, Kerstin Dörner, Caroline De Almeida, Martin Mueller, Andrey A. Mironov, Robert Ivánek, Peter Škrinjar, Michelle Jennifer Gut, Isabel Solheim, Nicole Beuret, Thomas Bock, Matthias Zeug, Maciej Jerzy Smialek, Sina Brandkamp, Timm Maier, , Maria Hondele

This study identifies PAIP1 as a cofactor for mRNA export and shows it couples nuclear to cytoplasmic mRNP remodeling and poly(A) homeostasis, affecting mRNA stability and development.

bioRxiv · Aug 3, 2026 · PreprintMolecular Biology

Localization-dependent activation of the DEAD-box ATPase Vasa by eLOTUS domains

Asen Garbelyanski, David Hauser, Alberto Trolese, Prateek Kumar, Hin Hark Gan, Caroline De Almeida, Matthias P. Mayer, Maria Hondele, Teresa Carlomagno, Kristin C. Gunsalus, Mandy Jeske

This study identifies how eLOTUS domains activate Vasa by promoting its RNA and ATP binding through a charged disordered sequence, revealing a localization-dependent regulatory mechanism.

bioRxiv · Mar 29, 2026 · PreprintBiochemistry

The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis

Hélène Scheer, Caroline De Almeida, Emilie Ferrier, Quentin Simonnot, Laure Poirier, David Pflieger, François M. Sement, Sandrine Koechler, Christina Piermaria, Paweł Szczepan Krawczyk, Seweryn Mroczek, Johana Chicher, Lauriane Kühn, Andrzej Dziembowski, Philippe Hammann, , Dominique Gagliardi

This paper identifies URT1 as a TUTase that connects decapping activators and prevents excessive deadenylation of mRNAs, thereby avoiding siRNA biogenesis in Arabidopsis.

Nature Communications · Feb 26, 2021Peer-reviewedMolecular Biology