Author
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
9 papers
Recent·Most cited
E. Mitsi, M. O. Diniz, J. Reine, A. M. Collins, R. Robinson, A. Hyder-Wright, M. Farrar, K. Liatsikos, J. Hamilton, O. Onyema, B. C. Urban, C. Solorzano, T. Lambe, S. J. Draper, D. Weiskopf, , D. M. Ferreira
This study shows that hybrid immunity from infection plus vaccination generates durable lung mucosal immunity, while peripheral vaccination alone does not.
bioRxiv · Jan 25, 2023 · PreprintImmunology
A. Peres, W. D. Lees, O. L. Rodriguez, N. Y. Lee, P. Polak, R. Hope, M. Kedmi, A. M. Collins, M. Ohlin, S. H. Kleinstein, C. Watson, G. Yaari
The paper introduces a new V allele naming scheme and genotype inference method for adaptive immune receptor sequencing, validated with genomic long read data and implemented in an R package.
bioRxiv · Dec 26, 2022 · PreprintImmunology
J. T. Kos, Y. Safonova, K. M. Shields, C. A. Silver, W. D. Lees, A. M. Collins, C. T. Watson
The paper catalogs germline immunoglobulin light chain variable genes in 18 mouse strains, finding extensive undocumented diversity not present in IMGT.
bioRxiv · May 1, 2022Immunology
K. J. Jackson, J. T. Kos, W. Lees, W. S. Gibson, M. L. Smith, A. Peres, G. Yaari, M. Corcoran, C. E. Busse, M. Ohlin, C. T. Watson, A. M. Collins
The paper defines a BALB/c IGHV reference set by analyzing long-read VDJ-C sequences from F1 mice, identifying strain-specific variations and germline alleles not present in existing genome references.
bioRxiv · Feb 28, 2022Immunology
A. Omer, A. Peres, O. L. Rodrigues, C. T. Watson, W. Lees, P. Polak, A. M. Collins, G. Yaari
The paper identifies undocumented polymorphisms in T cell receptor Beta genes using AIRR-seq data and shows how a single SNP affects TCR repertoire composition.
bioRxiv · May 17, 2021Immunology
J. Reine, B. F. Carniel, C. Solorzano, E. Mitsi, S. Pojar, E. Nikolau, E. L. German, A. D. Hyder-Wright, H. Hill, C. Hales, L. Brown, V. Horsley, L. Hughes, S. Zaidi, V. Connor, , S. P. Jochems
This study examines age-related changes in nasal mucosal immune composition and function, finding reduced granulocytes and T cells in young children and older adults, and links pneumococcal colonization to inflammation.
bioRxiv · Mar 14, 2019 · PreprintImmunology
E. Nikolaou, A. Blizard, S. Pojar, E. Mitsi, E. L. German, J. Reine, H. Hill, P. S. McNamara, A. M. Collins, D. M. Ferreira, S. P. Jochems
This study shows that nasal lining fluid filter strips provide equal pneumococcal detection sensitivity to deep nasopharyngeal swabs in children, offering a less unpleasant alternative.
bioRxiv · Mar 13, 2019Microbiology
E. L. German, C. Solorzano, S. Sunny, F. Dunne, J. F. Gritzfeld, E. Mitsi, E. Nikolaou, A. D. Hyder-Wright, A. M. Collins, S. B. Gordon, D. Ferreira
This study re-evaluates PCV-13 efficacy using molecular methods, finding reduced colonisation acquisition and density, suggesting vaccine impact is primarily through controlling colonisation density.
bioRxiv · Feb 14, 2019 · PreprintMicrobiology
S. P. Jochems, K. de Ruiter, C. Solorzano, A. Voskamp, E. Mitsi, E. Nikolaou, B. F. Carniel, S. Pojar, E. German, J. Reine, A. Soares-Schanoski, H. Hill, R. Robinson, A. D. Hyder-Wright, C. Weight, , D. M. Ferreira
The paper uses mass cytometry to analyze nasal immune cells after pneumococcal challenge, identifying immune changes linked to colonization and host-pathogen interactions.
bioRxiv · Feb 11, 2019Immunology