EASI-PASS: An accessible pipeline for linking functional imaging and mRNA profiling
Jonnathan Singh Alvarado, Crystian I Massengill, Josh Stern, Oren Amsalem, Bettina Francheska Ventura, Ahram Jang, Sarah Cook, Ana Veliche, Praneel S. Sunkavalli, Diti Patel, Juliana Colaccino, Kathryn E. Evans, Yuhan Wang, Mark L. Andermann
Matching cell masks between two-photon calcium images and thick, expanded EASI-FISH volumes recovers molecular identity for 72% (slice) to 83% (in vivo) of imaged neurons on conventional microscopes.
bioRxiv · Aug 28, 2026 · PreprintNeuroscience✦ In-depth digest