Author

Ramin Rad

Harvard University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Biochemistry· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:proteomics· 4 Approach:statistical model· 3 Research Focus:variant calling· 3 Approach:experimental assay· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Steven P. GygiiD· 3 shared Devin K. SchweppeiD· 2 shared Adam Baker· 1 shared Aleksandr GauniD· 1 shared Alexander MakaroviD· 1 shared Alexander Wagner· 1 shared Alexandra M. ThornockiD· 1 shared Alexandra PanoviD· 1 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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3 shared papersBiochemistry

Steven P. GygiORCID

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Author profile →

4 papers

Recent·Most cited

High Resolution Multi-Pass Astral Analyzer Quantification Enables Highly Multiplexed 35-Plex Tandem Mass Tag Proteomics

Hamish Stewart, Steven R. Shuken, Christopher Rathje, Julia Kraegenbring, Martin Zeller, Tabiwang N. Arrey, Bernd Hagedorn, Eduard V. Denisov, Robert Ostermann, Dmitry Grinfeld, J. Petzoldt, Daniel Mourad, Philipp Cochems, Florian Bonn, Bernard Delanghe, , Steven P. Gygi

This paper introduces a high-resolution multi-pass Astral analyzer mode for TMT proteomics, enabling 35-plex quantification with improved depth and precision.

bioRxiv · Feb 26, 2026 · PreprintBiochemistry

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, José Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra M. Thornock, Gabriela Zárraga-Granados, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, , Steven P. Gygi

The paper creates two large-scale cell-line-specific human interactomes using affinity-purification mass spectrometry and identifies shared and cell-specific protein interactions.

Cell · May 1, 2021Peer-reviewedSystems Biology

Improved Monoisotopic Mass Estimation for Deeper Proteome Coverage

Ramin Rad, Jiaming Li, Julian Mintseris, Jeremy D. O’Connell, Steven P. Gygi, Devin K. Schweppe

The paper introduces Monocle, an algorithm that improves monoisotopic mass estimation in proteomics, increasing peptide identifications by up to two-fold.

Journal of Proteome Research · Nov 16, 2020Peer-reviewedBioinformatics

Precise Estimation of In Vivo Protein Turnover Rates

Jonathon J. O’Brien, Vikram Narayan, Yao Liang Wong, Phillip Seitzer, Celeste M. Sandoval, Nicole Haste, Megan Smith, Ramin Rad, Aleksandr Gaun, Adam Baker, Matthew A. Kukurugya, Baby Martin-McNulty, Chunlian Zhang, Ganesh A. Kolumam, Carmela Sidrauski, , Rochelle Buffenstein

This paper introduces a new framework to estimate in vivo protein turnover rates by addressing labeling identification and amino acid enrichment challenges, revealing differences in protein turnover between mice and naked mole-rats.

bioRxiv · Nov 10, 2020 · PreprintBioinformatics