Author
The University of TokyoORCID 0000-0002-7812-8034Unclaimed ORCID profile · follow to get notified of new preprints
Mutual co-authors in cluster
6 papers
Recent·Most cited
Yasuko Isoe, Ryohei Nakamura, Shigenori Nonaka, Yasuhiro Kamei, Teruhiro Okuyama, Naoyuki Yamamoto, Hideaki Takeuchi, Hiroyuki Takeda
The paper identifies epigenetically distinct clonal compartments in the medaka fish dorsal pallium, revealing unique open chromatin patterns and synaptic features in the Dd2 region.
eLife · Jun 29, 2023Peer-reviewedNeuroscience
Ann Kathrin Heilig, Ryohei Nakamura, Atsuko Shimada, Yuka Hashimoto, Yuta Nakamura, Joachim Wittbrodt, Hiroyuki Takeda, Toru Kawanishi
The paper identifies Zic1's role in epaxial myotome morphogenesis by regulating Wnt11r to guide dorsal movement and neural tube coverage.
eLife · Apr 20, 2022Peer-reviewedDevelopmental Biology
Hiroto S. Fukushima, Hiroyuki Takeda, Ryohei Nakamura
The paper identifies histone modifications retained during epigenetic reprogramming in medaka embryos and demonstrates their functional roles in development.
bioRxiv · Mar 27, 2022Developmental Biology
Xiaotong Wu, Hongmei Zhang, Bingjie Zhang, Yu Zhang, Qiuyan Wang, Weimin Shen, Xi Wu, Lijia Li, Weikun Xia, Ryohei Nakamura, Bofeng Liu, Feng Liu, Hiroyuki Takeda, Anming Meng, Wei Xie
The paper shows that global DNA methylation inheritance and enhancer dememorization in zebrafish embryos protect embryonic gene programs by preventing ectopic gene activation.
Science Advances · Dec 22, 2021Peer-reviewedDevelopmental Biology
Ryohei Nakamura, Yuichi Motai, Masahiko Kumagai, Candice L. Wike, Haruyo Nishiyama, Yoichiro Nakatani, Neva C. Durand, Kaori Kondo, Takashi Kondo, Tatsuya Tsukahara, Atsuko Shimada, Bradley Robert Cairns, Erez Lieberman Aiden, Shinichi Morishita, Hiroyuki Takeda
The paper examines genome architecture changes during medaka gastrulation, finding that CTCF loops form while CTCF binding sites remain fixed, and transcription precedes mature domain formation.
Genome Research · Jun 1, 2021Peer-reviewedGenomics
Christopher B. Mulholland, Atsuya Nishiyama, Joël Ryan, Ryohei Nakamura, Merve Yiğit, Ivo M. Glück, Carina Trummer, Weihua Qin, Michael D. Bartoschek, Franziska R. Traube, Edris Parsa, Enes Ugur, Miha Modic, Aishwarya Acharya, Paul Stolz, , Heinrich Leonhardt
The paper identifies DPPA3 as a driver of genome-wide passive DNA demethylation in mammals, showing it can bypass TET protein requirements and function across species.
bioRxiv · Apr 4, 2020 · PreprintDevelopmental Biology