OLD sentinel: an abortive tRNase surveys phage replication and DNA defects in RecBCD-compromised cells
Anton DerzhaeviD, Jing Zhang, Alexey A. GavriloviD, Svetlana Belukhina, Aleksandr A. ShenfeldiD, Florence DepardieuiD, Baptiste SaudemontiD, Ilya ShamovskyiD, Vitaly Epshtein, Alina Demkina, Huaile Song, Olga Yu. BureninaiD, Mikhail A. SkuteliD, Maria A. Tikhomirova, Vadim MolodtsoviD, Konstantin SeverinoviD, Evgeny NudleriD, David BikardiD, Chengyuan WangiD, Artem B. IsaeviD
Abstract
OLD, an abortive immunity protein from prophage P2, consists of an ABC ATPase sensor and a TOPRIM nuclease effector -- a core architecture shared by a large protein family, including components of antiphage systems Gabija, PARIS, Septu, and Lamassu. OLD was originally identified for its lethality in recB-deficient cells and inhibition of bacteriophage {lambda} infection, but the mechanisms governing its activation have remained elusive. Here, we present the cryo-EM structure of an inactive OLD tetramer and show that destabilization into dimeric form opens the TOPRIM catalytic site, stimulating tRNA cleavage. This activity arrests translation, a phenotype rescued by phage-encoded tRNAs. We demonstrate that OLD activation is not strictly RecBCD-dependent: OLD binds aberrant DNA structures in recB-deficient cells, but activation during infection requires recognition of single-stranded DNA hairpins at the phage replication origin. Collectively, our findings reveal how host and phage DNA processing factors create a complex landscape controlling OLD-mediated immunity.
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