Author
S. Li
Primary ORCID profile (0000-0002-6864-5644 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints
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Biology Disciplines
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2023-2023 · peak 30/yrCo-Author Collaboration Network
10 top collaborators · 16 mutual co-author links397 papers
Recent·Most cited
- Evolutionary BiologybioRxivPreprint
Phylogenomic Analyses Reveal Widespread Gene Flow During the Early Radiation of Oaks and Relatives (Fagaceae: Quercoideae)
S. Liu, Y. Yang, Q. Tian…·T. Yi
This study uses phylogenomic data to show widespread gene flow and reticulation during the early radiation of oaks and related genera.
DOI 10.1101/2023.04.25.538215 - Cancer BiologybioRxivPreprint
Combinatorial genetic strategy accelerates the discovery of cancer genotype-phenotype associations
S. Li, A. Wong, H. Sun…·J. K. Lee
This paper introduces a combinatorial genetic strategy to generate diverse cancer models and uses single-cell sequencing to identify polygenic drivers of cancer phenotypes.
DOI 10.1101/2023.04.12.536652 - BiochemistrybioRxivPreprint
Discovery and Engineering of the L-Threonine Aldolase from Neptunomonas Marine for Efficient Synthesis of β-Hydroxy-α-Amino Acids via C-C Formation
Y. He, S. Li, J. Wang…·Y. Feng
This paper discovers and engineers an L-threonine aldolase from Neptunomonas marine to efficiently synthesize β-hydroxy-α-amino acids with high diastereoselectivity.
DOI 10.1101/2023.04.09.536162 - Cell BiologybioRxiv
IL-38 regulates intestinal stem cell homeostasis by inducing WNT signaling and beneficial IL-1beta secretion
A. Dinarello, M. May, J. Amo-Aparicio…·C. A. Dinarello
This paper shows IL-38 promotes intestinal stem cell growth by enhancing WNT signaling and beneficial IL-1beta secretion, while also having anti-inflammatory effects in the small intestine.
DOI 10.1073/pnas.2306476120 - Cancer BiologybioRxivPreprint
Reversing myeloid-derived suppressor cells mediated immunosuppression via p38α inhibition enhances immunotherapy efficacy in triple negative breast cancer
Q. Wang, S. Li, Y. Dai…·D. Wang
This study shows that p38α inhibition reduces immunosuppression by MDSCs and enhances immunotherapy in TNBC by decreasing CXCL1/CXCL2 expression.
DOI 10.1101/2023.03.31.535102 - Cell BiologybioRxivPreprint
One-step generation of auxin-inducible degron cells with high-efficiency homozygous tagging
S. Li, Y. Wang, M. v. d. Stoel…·E. Ikonen
This paper introduces a one-step genome editing method for high-efficiency homozygous tagging of endogenous proteins with auxin-inducible degron in human cells, achieving >80% efficiency in A431 cells and >50% in H9 ES cells.
DOI 10.1101/2023.03.26.534268 - BioengineeringbioRxivPreprint
Selective bioelectronic sensing of quinone pharmaceuticals using extracellular electron transfer in Lactiplantibacillus plantarum
S. Li, C. De Groote Tavares, J. G. Tolar, C. Ajo-Franklin
This paper develops a whole-cell bioelectronic sensor using Lactiplantibacillus plantarum to selectively detect quinone pharmaceuticals by leveraging extracellular electron transfer.
DOI 10.1101/2023.03.23.533500 - BioengineeringbioRxiv
Single-cell Electrochemical Aptasensor Array
S. Li, Y. Coffinier, C. Lagadec…·N. Clement
This paper demonstrates a single-cell electrochemical aptasensor array using nanopillar technology and redox-labelled aptamers for detecting EpCAM-expressing cells, enabling early cancer diagnosis.
DOI 10.1021/acssensors.3c00570 - MicrobiologybioRxivPreprint
Incomplete transcripts dominate the Mycobacterium tuberculosis transcriptome
X. Ju, S. Li, R. Froom…·S. Liu
This study profiles the Mtb transcriptome using SEnd-seq and finds that incomplete transcripts dominate due to low transcription processivity and transcription-translation coupling.
DOI 10.1101/2023.03.10.532058 - ImmunologybioRxiv
CD4+ T cells display a spectrum of recall dynamics during re-infection with malaria parasites.
H. J. Lee, M. d. L. Moreira, S. Li…·A. Haque
This study examines CD4+ T cell recall dynamics during Plasmodium re-infection in mice, revealing a spectrum of responses including refractory GC Tfh cells, rapid Th1-memory responses, and a partial facsimile of primary Th1 responses.
- BioengineeringbioRxivPreprint
A scalable, GMP-compatible, autologous organotypic cell therapy for Dystrophic Epidermolysis Bullosa
G. Neumayer, J. Torkelson, S. Li…·A. E. Oro
This paper develops a scalable, GMP-compatible cell therapy for Dystrophic Epidermolysis Bullosa using CRISPR-corrected iPS cells to generate functional skin grafts.
- Cell BiologybioRxiv
Chromosome biorientation requires Aurora B's spatial separation from its outer kinetochore substrates but not its turnover at kinetochores
S. Li, L. J. Garcia-Rodriguez, T. U. Tanaka
This study shows that Aurora B's spatial separation from outer kinetochore substrates stabilizes biorientation, while its turnover is not essential for this process in budding yeast.
DOI 10.1016/j.cub.2023.09.006 - BiophysicsbioRxiv
Structural and mechanistic insight into ribosomal ITS2 RNA processing by nuclease-kinase machinery
J. Chen, H. Chen, S. Li…·L. Liu
The paper reports structures of Las1-Grc3 complexes and identifies their role in pre-rRNA cleavage during ribosome biosynthesis.
DOI 10.7554/elife.86847.3 - ImmunologybioRxivPreprint
Spatial transcriptomics maps molecular and cellular requirements for CD4+ T cell-dependent immunity to malaria.
C. G. Williams, M. d. L. Moreira, T. Asatsuma…·A. Haque
This paper uses spatial transcriptomics to map CD4+ T cell and B cell interactions in the spleen during malaria infection, revealing their localization and molecular requirements for immunity.
DOI 10.1101/2023.02.23.529309 - PhysiologybioRxiv
A Metabolomics Study of Thrombosis after Cardiac Surgery in Children with Congenital Heart Disease
S. Li, D. Watson, A. Jorgenson…·M. T. Huntley
This study identifies metabolites and pathways associated with thrombosis after cardiac surgery in children with congenital heart disease using untargeted metabolomics.
DOI 10.1161/atvbaha.123.319181 - PathologybioRxivPreprint
Tenacibaculosis in wild-caught, captive Chinook salmon (Oncorhynchus tshawytscha) in British Columbia, Canada
E. Di Cicco, K. R. Zinn, S. D. Johnston…·K. M. Miller
This paper reports the first diagnosed case of tenacibaculosis in wild-caught Chinook salmon in British Columbia, Canada, linked to high levels of Tenacibaculum dicentrarchi in skin and gills.
DOI 10.1101/2023.02.17.529034 - Cell BiologybioRxivPreprint
Comparative transcriptomics reveal differential gene expression in Plasmodium vivax geographical isolates and implications on erythrocyte invasion mechanisms
D. Kepple, C. T. Ford, J. Williams…·E. Lo
This paper compares the transcriptomes of Plasmodium vivax isolates from different geographical regions, identifying differential gene expression patterns and potential biomarkers for gametocyte detection.
DOI 10.1101/2023.02.16.528793 - PhysiologybioRxiv
E2F1 Mediates SOX17 Deficiency-Induced Pulmonary Hypertension
D. Yi, B. Liu, H. Ding…·Z. Dai
This study shows that SOX17 deficiency in endothelial cells causes pulmonary hypertension via E2F1 signaling, suggesting E2F1 as a therapeutic target in PAH.
DOI 10.1161/hypertensionaha.123.21241 - ImmunologybioRxiv
Comprehensive Multi-omics Analysis Reveals the Core Role of Glycerophospholipid Metabolism in Rheumatoid Arthritis Development
C. Jian, L. Wei, T. Wu…·F. Zeng
This study identifies glycerophospholipid metabolism as a key factor in rheumatoid arthritis development through multi-omics analysis of gut microbiota, metabolites, and gene expression.
DOI 10.1186/s13075-023-03208-2 - Cell BiologybioRxiv
Cardiomyocyte-fibroblast interaction regulates ferroptosis and fibrosis after myocardial injury
M. E. Mohr, S. Li, A. M. Trouten…·G. TAO
This study shows that cardiac fibroblasts protect cardiomyocytes from ferroptosis and regulate fibrosis after myocardial injury through paracrine factors and Pitx2 signaling.
DOI 10.1016/j.isci.2024.109219 - PathologybioRxivPreprint
A maize lipid droplet-associated protein is modulated by a virus to promote viral multiplication and infection
S. Wang, S. Li, X. Wang…·Z. Fan
This study shows that rice black streaked dwarf virus recruits a maize lipid droplet-associated protein to regulate fatty acid metabolism, promoting viral multiplication and infection.
DOI 10.1101/2023.02.02.526882 - Plant BiologybioRxiv
CALCIUM-DEPENDENT PROTEIN KINASE32 regulates cellulose biosynthesis through post-translational modification of cellulose synthase
The paper identifies CPK32 as a kinase that phosphorylates CESA3, affecting CSC motility and stability, thereby regulating cellulose biosynthesis.
DOI 10.1111/nph.19106 - BiophysicsbioRxivPreprint
TRPV1 Opening is Stabilized Equally by Its Four Subunits
S. Li, P. T. Nguyen, S. Vu…·J. Zheng
The paper measures how RTX binding to TRPV1 subunits affects channel opening, finding each subunit contributes equally to activation energy.
DOI 10.1101/2023.01.26.525787 - ImmunologybioRxiv
Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis
E. Mennillo, Y. J. Kim, G. Lee…·M. G. Kattah
This study uses single-cell and spatial multi-omics to show VDZ affects mononuclear phagocyte subsets and highlights gene expression patterns in UC.
- ImmunologybioRxivPreprint
Preclinical Basis of the Efficacy and Pharmacodynamics of Finotonlimab, a Humanized Anti-PD-1 Monoclonal Antibody with Potent Implications for Clinical Benefit
X. Yang, J. Li, E. Guo…·L. Xie
This paper evaluates the preclinical efficacy and pharmacodynamics of Finotonlimab, a humanized anti-PD-1 antibody, showing high PD-1 binding affinity and sustained receptor occupancy in cynomolgus monkeys.
- Cell BiologybioRxivPreprint
Phosphorylation and Lamin B receptor modulate the accumulation of PERIOD protein foci
The paper shows that phosphorylation and Lamin B receptor regulate PERIOD protein foci accumulation by modulating the circadian phosphatase MTS and kinase DBT.
DOI 10.1101/2023.01.16.524233 - Cell BiologybioRxivPreprint
Loss of PTPMT1 limits mitochondrial utilization of carbohydrates and leads to muscle atrophy and heart failure in tissue-specific knockout mice
H. Zheng, Q. Li, S. Li…·C.-K. Qu
This study shows that PTPMT1 deletion in skeletal muscle and heart causes metabolic inflexibility, leading to atrophy, heart failure, and death, while liver and adipose tissue deletion has no effect.
DOI 10.1101/2023.01.09.523031 - Cancer BiologybioRxivPreprint
Subclonal somatic copy number alterations emerge and dominate in recurrent osteosarcoma
M. D. Kinnaman, S. Zaccaria, A. Makohon-Moore…·C. A. Iacobuzio-Donahue
This study identifies subclonal copy number alterations in relapsed osteosarcoma, showing MYC gain/amplification in treatment-resistant clones and their emergence before chemotherapy.
DOI 10.1101/2023.01.05.522765 - Plant BiologybioRxivPreprint
A simple and efficient in planta transformation method based on the active regeneration capacity of plants
G. Mei, A. Chen, Y. Wang…·X. Hou
This paper introduces a new plant transformation method called RAPID that achieves high efficiency and speed without tissue culture.
DOI 10.1101/2023.01.02.522521