Author
X. Wang
Leiden University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
Same name, identified by ORCID
Biology Disciplines
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2023-2023 · peak 30/yrCo-Author Collaboration Network
10 top collaborators · 20 mutual co-author links787 papers
Recent·Most cited
- Cell BiologybioRxivPreprintDOI 10.1101/2023.05.26.542539
- Cancer BiologybioRxiv
Direct interaction with the BRD4 carboxyl-terminal motif (CTM) and TopBP1 is required for human papillomavirus 16 E2 association with mitotic chromatin and plasmid segregation function
A. T. Prabhakar, C. D. James, C. Fontan…·I. M. Morgan
This study shows that E2 protein interaction with BRD4's CTM and TopBP1 is essential for HPV16's mitotic chromatin association and plasmid segregation, offering therapeutic targets for viral genome targeting.
DOI 10.1128/jvi.00782-23 - EcologybioRxivPreprint
Latitudinal scaling of aggregation with abundance and its consequences for coexistence in species rich forests
T. Wiegand, X. Wang, S. Fischer…·A. Huth
The paper examines latitudinal patterns in species aggregation and abundance, showing how these patterns affect coexistence in forests and introduces a framework to model their impact on extinction risk.
DOI 10.1101/2023.05.18.541254 - Cell BiologybioRxivPreprint
In vivo Ontogeny of human forebrain neural progenitor cell grafts in adult rats: an immunohistological study
C. Liu, A. Lin, Q. Xing…·Y. Guo
This study tracks human neural progenitor cell grafts in adult rats up to 9 months, revealing their migration and differentiation patterns, and highlights their potential for neural repair.
- ImmunologybioRxiv
Early cellular and molecular signatures correlate with severity of West Nile Virus infection
H.-J. Lee, Y. Zhao, I. Fleming…·R. R. Montgomery
The paper identifies cellular and molecular signatures associated with varying severities of West Nile Virus infection using multi-omics analysis of immune responses.
DOI 10.1016/j.isci.2023.108387 - BiochemistrybioRxiv
Lipid-anchored Proteasomes Control Membrane Protein Homeostasis
R. Zhang, S. Pan, S. Zheng…·X. Guo
This study identifies N-myristoylation of Rpt2 as a mechanism for proteasome-membrane interaction, showing its role in membrane protein homeostasis and its impact on cellular processes and tumor growth.
DOI 10.1126/sciadv.adj4605 - MicrobiologybioRxiv
Prokaryotic Gabija complex senses and executes nucleotide depletion and DNA cleavage for antiviral defense
R. Cheng, F. Huang, X. Lu…·B. Zhu
The paper identifies the Gabija complex's mechanism of sensing nucleotide depletion and executing DNA cleavage for antiviral defense, showing its unique synergy between GajA and GajB.
DOI 10.1016/j.chom.2023.06.014 - ImmunologybioRxivPreprint
A SREBF2-dependent gene program drives an immunotolerant dendritic cell population during cancer progression
M. P. Plebanek, Y. Xue, Y.-V. Nguyen…·B. A. Hanks
The paper identifies SREBF2 as a regulator of mregDC development and function in the tumor microenvironment, highlighting it as a therapeutic target for immune tolerance.
DOI 10.1101/2023.04.26.538456 - BioengineeringbioRxivPreprint
Designer DNA NanoGripper
L. Zhou, Y. Xiong, L. Cooper…·X. Wang
The paper designs, synthesizes, and characterizes a DNA nanorobot, NanoGripper, capable of capturing viral particles and functioning as a biosensor for SARS-CoV-2 detection in human saliva.
DOI 10.1101/2023.04.26.538490 - BiophysicsbioRxiv
Class I histone deacetylase complex: structure and functional correlates
X. Wang, Y. Wang, S. Liu…·H. Zhang
The paper reports cryo-EM structures of the Schizosaccharomyces pombe Clr6S complex, revealing its active site and interactions with a nucleosome.
DOI 10.1073/pnas.2307598120 - ImmunologybioRxivPreprint
Metabolic Reprogramming via targeting ACOD1 promotes polarization and anti-tumor activity of human CAR-iMACs in solid tumors
X. Wang, S. Su, Y. Zhu…·J. ZHANG
This study shows that targeting ACOD1 enhances the pro-inflammatory state and anti-tumor activity of human CAR-iMACs in solid tumors.
DOI 10.1101/2023.04.20.537647 - Cell BiologybioRxivPreprint
Decoding human in vitro terminal erythropoiesis originating from umbilical cord blood mononuclear cells and pluripotent stem cells
X. Wang, W. Zhang, S. Zhao…·X. Pei
This study maps ex vivo terminal erythropoiesis from umbilical cord blood mononuclear cells and pluripotent stem cells, identifying differences in regulatory dynamics and CD99 expression affecting erythroid expansion and maturation.
- Cancer BiologybioRxivPreprint
Integrin beta4 promotes DNA damage drug resistance in triple-negative breast cancer via TNFAIP2/IQGAP1/Rac1
H. Fang, W. Ren, Q. Cui…·C. Chen
This study identifies the Integrin β4/TNFAIP2/IQGAP1/RAC1 pathway as a mechanism for DNA damage drug resistance in triple-negative breast cancer.
DOI 10.1101/2023.04.17.537130 - BioengineeringbioRxiv
Deep flanking sequence engineering for efficient promoter design
P. Zhang, H. Wang, H. Xu…·X. Wang
This paper introduces DeepSEED, an AI framework for designing synthetic promoters by optimizing flanking sequences, showing improved performance in prokaryotic and eukaryotic systems.
- Cell BiologybioRxiv
COP9 Signalosome Promotes Neointimal Hyperplasia via Deneddylation and CSN5-Mediated Nuclear Export
S. Giri, C. Suo, R. Pardi…·X. Wang
This study shows that the COP9 signalosome promotes neointimal hyperplasia via deneddylation and CSN5-mediated nuclear export of p27 in vascular smooth muscle cells.
DOI 10.1093/cvr/cvag067 - MicrobiologybioRxivPreprint
Toleration of Frameshift Mutations in mRNA Sequences Encoding the N-terminal Peptides of Bacterial Type III Effectors
Y. Wang, J. Yang, M. Lv…·Y. Hu
The paper uses computational methods to analyze mRNA sequences of bacterial type III and IV effectors, finding that type III effectors show high frameshift tolerance in secretion signals, while type IV show low tolerance.
DOI 10.1101/2023.04.10.536236 - Pharmacology & ToxicologybioRxivPreprint
MORE IS DIFFERENT: DRUG PROPERTY ANALYSIS ON CELLULAR HIGH-CONTENT IMAGES USING DEEP LEARNING
X. Gao, X. Guo, F. Zhang…·L. Lai
The paper introduces MID, a deep learning method for high-content image analysis that outperforms existing tools in drug toxicity classification and compound identification.
DOI 10.1101/2023.04.10.536183 - MicrobiologybioRxivPreprint
High-throughput phenogenotyping of Mycobacteria tuberculosis clinical strains reveals bacterial determinants of treatment outcomes
S. Stanley, C. N. Spaulding, Q. Liu…·S. M. Fortune
This study uses high-throughput phenogenotyping to link Mtb genetic variants to clinical outcomes, identifying bacterial traits associated with treatment failure and transmission.
DOI 10.1101/2023.04.09.536166 - Plant BiologybioRxiv
Substrate specificity and functional conservation of SWEET10 transporter in pineapple
B. Fakher, M. A. Ashraf, L. Wang…·Y. Qin
This study examines the substrate specificity and functional conservation of the SWEET10 transporter in pineapple by comparing it to Arabidopsis SWEET8 and analyzing its role in microspore formation.
DOI 10.1093/hr/uhad175 - Pharmacology & ToxicologybioRxivPreprint
Decoding the Cure-all Effects of Ginseng
S. Loo, A. Kam, B. Dutta…·J. P. Tam
This study identifies ginsentides as active compounds in ginseng that restore homeostasis under stress by interacting with multiple physiological systems.
DOI 10.1101/2023.04.05.535784 - Cell BiologybioRxiv
Ser14-RPN6 Phosphorylation Mediates the Activation of 26S Proteasomes by cAMP and Protects against Cardiac Proteotoxic Stress in Mice
DOI 10.1161/circresaha.123.322887 - MicrobiologybioRxivPreprint
Temporal colonization of the gut microbiome in neonatal Bos taurus at single nucleotide resolution
Q. Dong, D. Hua, X. Wang…·L. Chen
This study tracks microbial colonization in neonatal calves and identifies genetic links between microbes and host metabolites affecting health and growth.
DOI 10.1101/2023.03.30.535011 - MicrobiologybioRxivPreprint
Staphylococcus aureus delta toxin modulates both extracellular membrane vesicle biogenesis and amyloid formation
X. Wang, D. S. Uppu, S. W. Dickey…·J. C. Lee
This study shows that Staphylococcus aureus delta toxin promotes both extracellular membrane vesicle biogenesis and amyloid fibril formation in vitro, but amyloids are not detected in vivo despite MVs being present.
DOI 10.1101/2023.03.23.533957 - Cancer BiologybioRxivPreprint
The Potential of Low Press and Hypoxia Environment in Assisting Pan-cancer Treatment
X. Hu, X. Chen, M. Sun…·S. Zhang
This study constructs a pan-cancer prognosis risk model using ADME genes under low press and hypoxia conditions, finding lower risk scores correlate with better survival in 25 cancer types.
DOI 10.1101/2023.03.23.534056 - BiochemistrybioRxivPreprint
Selective inhibitors of the Aurora A-TPX2 protein-protein interaction exhibit in vivo efficacy as targeted anti-mitotic agents
S. R. Stockwell, D. E. Scott, G. Fischer…·M. Hyvönen
The paper develops selective Aurora A-TPX2 inhibitors that show in vivo efficacy and synergy with paclitaxel in pancreatic cancer.
DOI 10.1101/2023.03.22.533679 - Plant BiologybioRxivPreprint
Widespread readthrough events in plants reveal unprecedented plasticity of stop codons
Y. Zhang, H. Li, Y. Shen…·L. Wu
The paper identifies widespread stop codon readthrough events in plants and reveals the plasticity of stop codons in encoding amino acids.
DOI 10.1101/2023.03.20.533458 - BiophysicsbioRxiv
Using DNA flow-stretching assay as a tool to validate the tagging of DNA-binding proteins for single-molecule experiments
M. Molina, L. E. Way, Z. Ren…·H. Kim
This paper uses a DNA flow-stretching assay to evaluate how a KCK tag affects DNA-binding protein behavior in single-molecule experiments.
DOI 10.1016/j.crmeth.2023.100614 - MicrobiologybioRxivPreprint
Resolving the developmental mechanisms of coagulation abnormalities characteristic of SARS-CoV2 based on single-cell transcriptome analysis
X. Luo, N. Zhang, Y. Liu…·G. Wang
This study uses single-cell transcriptome analysis to identify immune and metabolic mechanisms underlying coagulation abnormalities in SARS-CoV-2 infection.
- BioengineeringbioRxivPreprint
Constitutively synergistic multiagent drug formulations targeting MERTK, FLT3, and BCL-2 for treatment of AML
J. M. Kelvin, J. Jain, A. Thapa…·E. C. Dreaden
The paper develops a nanoscale combination drug formulation targeting MERTK, FLT3, and BCL-2 to treat AML, showing improved synergistic responses in vitro and in patient samples.
DOI 10.1101/2023.03.13.531236 - Plant BiologybioRxivPreprint
FAN, the homolog of mammalian Apoptosis Antagonizing Transcription Factor AATF/Che-1 protein, is involved in safeguarding genome stability through the ATR induced pathway in Arabidopsis
F. Liu, B. Wang, X. Wang…·X. Li
This study identifies FAN, a homolog of AATF/Che-1 in Arabidopsis, as essential for genome stability through the ATR-induced DNA damage response pathway.
DOI 10.1101/2023.03.10.531693